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    BRF2 BRF2 general transcription factor IIIB subunit [ Charadrius vociferus (killdeer) ]

    Gene ID: 104285856, updated on 29-Sep-2024

    Summary

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    Gene symbol
    BRF2
    Gene description
    BRF2 general transcription factor IIIB subunit
    Locus tag
    N301_00661
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Charadrius vociferus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
    Orthologs
    human mouse all
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    Genomic context

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    See BRF2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009648254.1 (85541..88527)

    NW_009648254.1Genomic Context describing neighboring genes Neighboring gene prolactin-releasing peptide receptor-like Neighboring gene RAB11 family interacting protein 1 Neighboring gene adhesion G protein-coupled receptor A2 Neighboring gene pyridoxal phosphate binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009648254.1 Unplaced Scaffold Reference ASM70802v2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription preinitiation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor IIIB 50 kDa subunit
    Names
    BRF2 RNA polymerase III transcription initiation factor subunit
    BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit
    Transcription factor IIIB 50 kDa subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM70802v2

    Genomic

    1. NW_009648254.1 Reference ASM70802v2

      Range
      85541..88527
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009884360.1 → XP_009882662.1  transcription factor IIIB 50 kDa subunit

      UniProtKB/TrEMBL
      A0A0A0AI82
      Conserved Domains (2) summary
      COG1405
      Location:64 → 225
      SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
      cd00043
      Location:70 → 136
      CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
    Nucleotide Protein
    Heading Accession and Version

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