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    LOC103834775 ethylene-responsive transcription factor ERF054 [ Brassica rapa (field mustard) ]

    Gene ID: 103834775, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103834775
    Gene description
    ethylene-responsive transcription factor ERF054
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103834775 in Genome Data Viewer
    Location:
    chromosome: A8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A08 NC_024802.2 (14977035..14978111)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A8 NC_024802.1 (14224701..14225799)

    Chromosome A08 - NC_024802.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103834773 Neighboring gene U3 small nucleolar RNA-associated protein 6 homolog Neighboring gene protein TSS Neighboring gene WAT1-related protein At4g28040-like Neighboring gene tRNA (adenine(37)-N6)-methyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor ERF054

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024802.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      14977035..14978111
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009110862.2 → XP_009109110.1  ethylene-responsive transcription factor ERF054

      UniProtKB/TrEMBL
      A0A397YIG0, M4D1N3
      Conserved Domains (1) summary
      cd00018
      Location:131 → 191
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
    Nucleotide Protein
    Heading Accession and Version

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