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    LOC103799603 lysine-specific demethylase 5A-like [ Acanthisitta chloris (rifleman) ]

    Gene ID: 103799603, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LOC103799603
    Gene description
    lysine-specific demethylase 5A-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acanthisitta chloris
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Acanthisittidae; Acanthisitta
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC103799603 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current ASM69581v1 (GCF_000695815.1) Unplaced Scaffold NW_008651140.1 (918..20747, complement)

    NW_008651140.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008651140.1 Unplaced Scaffold Reference ASM69581v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 5A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Acanthisitta chloris Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM69581v1

    Genomic

    1. NW_008651140.1 Reference ASM69581v1

      Range
      918..20747 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009071943.1 → XP_009070191.1  lysine-specific demethylase 5A-like

      Conserved Domains (3) summary
      smart01014
      Location:32 → 117
      ARID; ARID/BRIGHT DNA binding domain
      smart00558
      Location:389 → 442
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15602
      Location:241 → 289
      PHD1_KDM5A; PHD finger 1 found in Lysine-specific demethylase 5A (KDM5A)
    Nucleotide Protein
    Heading Accession and Version

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