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    TPRN taperin [ Opisthocomus hoazin ]

    Gene ID: 104335368, updated on 3-Aug-2024

    Summary

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    Gene symbol
    TPRN
    Gene description
    taperin
    Locus tag
    N306_05054
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Opisthocomus hoazin
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Opisthocomiformes; Opisthocomidae; Opisthocomus
    Orthologs
    human mouse all
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    Genomic context

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    See TPRN in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current ASM69207v1 (GCF_000692075.1) Unplaced Scaffold NW_009902918.1 (175438..206887, complement)

    NW_009902918.1Genomic Context describing neighboring genes Neighboring gene discoidin domain-containing receptor 2-like Neighboring gene torsin family 4 member A Neighboring gene NMDA receptor synaptonuclear signaling and neuronal migration factor Neighboring gene patatin like phospholipase domain containing 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009902918.1 Unplaced Scaffold Reference ASM69207v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of anaphase-promoting complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    taperin
    Names
    Anaphase-promoting complex subunit 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Opisthocomus hoazin Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM69207v1

    Genomic

    1. NW_009902918.1 Reference ASM69207v1

      Range
      175438..206887 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009941097.1 → XP_009939399.1  taperin

      UniProtKB/TrEMBL
      A0A091WJJ0
      Conserved Domains (3) summary
      smart01013
      Location:829 → 889
      APC2; Anaphase promoting complex (APC) subunit 2
      smart00182
      Location:581 → 714
      CULLIN; Cullin
      pfam13914
      Location:4 → 53
      Phostensin; Phostensin PP1-binding and SH3-binding region
    Nucleotide Protein
    Heading Accession and Version

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