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    SEMA3C semaphorin 3C [ Nipponia nippon (crested ibis) ]

    Gene ID: 104010751, updated on 3-Aug-2024

    Summary

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    Gene symbol
    SEMA3C
    Gene description
    semaphorin 3C
    Locus tag
    Y956_10546
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nipponia nippon
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Threskiornithidae; Nipponia
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA3C in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_008999783.1 (12313649..12437629, complement)

    NW_008999783.1Genomic Context describing neighboring genes Neighboring gene G protein subunit alpha transducin 3 Neighboring gene CD36 molecule (CD36 blood group) Neighboring gene hepatocyte growth factor Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008999783.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-3C
    Names
    Semaphorin-3C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM70822v1 Primary Assembly

    Genomic

    1. NW_008999783.1 Reference ASM70822v1 Primary Assembly

      Range
      12313649..12437629 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009462915.1 → XP_009461190.1  semaphorin-3C

      See identical proteins and their annotated locations for XP_009461190.1

      UniProtKB/TrEMBL
      A0A091UY42
      Conserved Domains (3) summary
      cd05871
      Location:575 → 664
      Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
      cd11251
      Location:45 → 514
      Sema_3C; The Sema domain, a protein interacting module, of semaphorin 3C (Sema3C)
      smart00423
      Location:513 → 550
      PSI; domain found in Plexins, Semaphorins and Integrins
    Nucleotide Protein
    Heading Accession and Version

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