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    HELRODRAFT_176655 hypothetical protein [ Helobdella robusta ]

    Gene ID: 20205916, updated on 28-Dec-2023

    Summary

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    Gene symbol
    HELRODRAFT_176655
    Gene description
    hypothetical protein
    Locus tag
    HELRODRAFT_176655
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Helobdella robusta
    Lineage
    Eukaryota; Metazoa; Lophotrochozoa; Annelida; Clitellata; Hirudinida; Hirudinea; Rhynchobdellida; Glossiphoniidae; Helobdella
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    Genomic context

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    Location:
    chromosome: Unknown
    Exon count:
    25

    NW_008704865.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008704865.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insights into bilaterian evolution from three spiralian genomes. Simakov O, et al. Nature, 2013 Jan 24. PMID 23254933, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell adhesion molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_008704865.1 Reference assembly

      Range
      49943..65469 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009024031.1 → XP_009022279.1  hypothetical protein HELRODRAFT_176655 [Helobdella robusta]

      See identical proteins and their annotated locations for XP_009022279.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      T1FAR7
      Conserved Domains (4) summary
      smart00228
      Location:472 → 555
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:323 → 393
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam00791
      Location:1296 → 1392
      ZU5; ZU5 domain
      cl17036
      Location:575 → 621
      SH3; Src Homology 3 domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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