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    CG31278 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41282, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG31278provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0051278
    Locus tag
    Dmel_CG31278
    See related
    AllianceGenome:FB:FBgn0051278
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG6482; Dmel\CG31278; PDF
    Summary
    Predicted to enable peptide deformylase activity. Predicted to be involved in N-terminal protein amino acid modification; co-translational protein modification; and peptidyl-methionine modification. Predicted to be active in mitochondrion. Orthologous to human PDF (peptide deformylase, mitochondrial). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG31278 in Genome Data Viewer
    Location:
    86C4-86C4; 3-50 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (10707398..10708340, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (6533120..6534062, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of eukaryotic peptide deformylases reveals universality of N-terminal protein processing mechanisms. Giglione C, et al. EMBO J, 2000 Nov 1. PMID 11060042, Free PMC Article
    2. Genome-wide association analysis of oxidative stress resistance in Drosophila melanogaster. Weber AL, et al. PLoS One, 2012. PMID 22496853, Free PMC Article
    3. Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet. Çiçek IÖ, et al. Genetics, 2016 Mar. PMID 26801178, Free PMC Article
    4. Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions. Erives AJ. Dev Genes Evol, 2015 Sep. PMID 26173873, Free PMC Article
    5. A protein complex network of Drosophila melanogaster. Guruharsha KG, et al. Cell, 2011 Oct 28. PMID 22036573, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables peptide deformylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables peptide deformylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables peptide deformylase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in co-translational protein modification IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG31278-PA
    CG31278-PB
    NP_001287273.1
    NP_731494.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      10707398..10708340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_169354.3 → NP_731494.1  uncharacterized protein Dmel_CG31278, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_731494.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VGY2
      Related
      FBpp0081795
      Conserved Domains (1) summary
      pfam01327
      Location:50 → 216
      Pep_deformylase; Polypeptide deformylase

    2. NM_001300344.1 → NP_001287273.1  uncharacterized protein Dmel_CG31278, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287273.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4LI27
      Conserved Domains (1) summary
      cl00234
      Location:50 → 124
      Pep_deformylase; Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II) ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4LI27 A0A0B4LI27
    Q9VGY2 Q9VGY2

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