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    ECT1 evolutionarily conserved C-terminal region 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819550, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ECT1
    Official Full Name
    evolutionarily conserved C-terminal region 1
    Primary source
    TAIR:AT3G03950
    Locus tag
    AT3G03950
    See related
    Araport:AT3G03950
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    evolutionarily conserved C-terminal region 1; T11I18.6; T11I18_6
    Summary
    Physically interacts with CIPK1. Located in the nucleus.
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    Genomic context

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    See ECT1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (1021146..1024015)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene kinase-like protein Neighboring gene Protein kinase family protein Neighboring gene TCP-1/cpn60 chaperonin family protein Neighboring gene ARM repeat superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The m6A reader ECT1 drives mRNA sequestration to dampen salicylic acid-dependent stress responses in Arabidopsis. Lee KP, et al. Plant Cell, 2024 Feb 26. PMID 38041863, Free PMC Article
    2. Novel CIPK1-associated proteins in Arabidopsis contain an evolutionarily conserved C-terminal region that mediates nuclear localization. Ok SH, et al. Plant Physiol, 2005 Sep. PMID 16113215, Free PMC Article
    3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035552.2
    NM_111266.2
    NM_180179.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N6-methyladenosine-containing RNA reader activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within calcium-mediated signaling TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in mRNA catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to salicylic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    evolutionarily conserved C-terminal region 1
    NP_001030629.1
    • evolutionarily conserved C-terminal region 1 (ECT1); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 3 (TAIR:AT5G61020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_566218.1
    • evolutionarily conserved C-terminal region 1 (ECT1); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 3 (TAIR:AT5G61020.1); Has 965 Blast hits to 955 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 418; Fungi - 123; Plants - 338; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).
    NP_850510.1
    • evolutionarily conserved C-terminal region 1 (ECT1); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 3 (TAIR:AT5G61020.1); Has 964 Blast hits to 954 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 417; Fungi - 123; Plants - 338; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1021146..1024015
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001035552.2 → NP_001030629.1  evolutionarily conserved C-terminal region 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030629.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3MK94, Q8W573, Q9SQR7
      UniProtKB/TrEMBL
      A0A654F3W6
      Conserved Domains (1) summary
      pfam04146
      Location:245 → 383
      YTH; YT521-B-like domain

    2. NM_180179.3 → NP_850510.1  evolutionarily conserved C-terminal region 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850510.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8W573
      Conserved Domains (1) summary
      pfam04146
      Location:241 → 379
      YTH; YT521-B-like domain

    3. NM_111266.2 → NP_566218.1  evolutionarily conserved C-terminal region 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566218.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J2E9
      Conserved Domains (1) summary
      pfam04146
      Location:242 → 380
      YTH; YT521-B-like domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3MK94.1

    Gene LinkOut

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