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    Exonuclease family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824171, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Exonuclease family protein
    Primary source
    TAIR:AT3G50090
    Locus tag
    AT3G50090
    See related
    Araport:AT3G50090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (18575432..18577336)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene CYCLIN D3;3 Neighboring gene VIER F-box protein 2 Neighboring gene small RNA degrading nuclease 1 Neighboring gene PTEN 3 Neighboring gene transmembrane protein, putative (DUF247)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Exonuclease family protein
    NP_190578.1
    • Exonuclease family protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1); Has 1396 Blast hits to 1380 proteins in 227 species: Archae - 0; Bacteria - 4; Metazoa - 618; Fungi - 412; Plants - 213; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18575432..18577336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114869.1 → NP_190578.1  Exonuclease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190578.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SN09
      UniProtKB/TrEMBL
      A0A178VBS7
      Conserved Domains (2) summary
      cd00590
      Location:236 → 300
      RRM_SF; RNA recognition motif (RRM) superfamily
      cl10012
      Location:76 → 205
      DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SN09.1

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