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    LOC103341623 uncharacterized LOC103341623 [ Prunus mume (Japanese apricot) ]

    Gene ID: 103341623, updated on 28-Dec-2023

    Summary

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    Gene symbol
    LOC103341623
    Gene description
    uncharacterized LOC103341623
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus mume
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC103341623 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current P.mume_V1.0 (GCF_000346735.1) Unplaced Scaffold NW_007362496.1 (390325..395724)

    NW_007362496.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103341621 Neighboring gene probable polygalacturonase At3g15720 Neighboring gene uncharacterized LOC107881793 Neighboring gene uncharacterized LOC103341626

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_007362496.1 Unplaced Scaffold Reference P.mume_V1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC103341623

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus mume Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.mume_V1.0 Primary Assembly

    Genomic

    1. NW_007362496.1 Reference P.mume_V1.0 Primary Assembly

      Range
      390325..395724
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008245169.1 → XP_008243391.1  uncharacterized protein LOC103341623

      Conserved Domains (6) summary
      cd00303
      Location:618 → 712
      retropepsin_like; Retropepsins; pepsin-like aspartate proteases
      cd01647
      Location:932 → 1128
      RT_LTR; RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the ...
      pfam03732
      Location:124 → 216
      Retrotrans_gag; Retrotransposon gag protein
      cd09274
      Location:1189 → 1307
      RNase_HI_RT_Ty3; Ty3/Gypsy family of RNase HI in long-term repeat retroelements
      pfam00078
      Location:966 → 1128
      RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)
      pfam00665
      Location:1422 → 1531
      rve; Integrase core domain
    Nucleotide Protein
    Heading Accession and Version

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