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    lin-52 DREAM core complex component lin-52 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 664419, updated on 3-Jul-2024

    Summary

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    Gene symbol
    lin-52
    Gene description
    DREAM core complex component lin-52
    Locus tag
    TcasGA2_TC007337
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    Genomic context

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    See lin-52 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 9 NC_087402.1 (6136354..6137383, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG4 NC_007419.2 (5984162..5985127, complement)

    Chromosome 9 - NC_087402.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135267186 Neighboring gene echinoderm microtubule-associated protein-like 2 Neighboring gene uncharacterized LOC135267185 Neighboring gene probable protein phosphatase 2C T23F11.1 Neighboring gene CoRest Neighboring gene mitochondrial ribosomal protein L41

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DRM complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein lin-52 homolog
    Names
    AUGUSTUS-3.0.2_07337
    GLEAN_07337
    Protein lin-52 homolog-like Protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087402.1 Reference icTriCast1.1 Primary Assembly

      Range
      6136354..6137383 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008194019.3 → XP_008192241.1  protein lin-52 homolog

      See identical proteins and their annotated locations for XP_008192241.1

      UniProtKB/TrEMBL
      D2A063
      Conserved Domains (1) summary
      pfam10044
      Location:24 → 116
      LIN52; Retinal tissue protein
    Nucleotide Protein Strain
    Heading Accession and Version

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