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    rpe ribulose-5-phosphate-3-epimerase [ Poecilia formosa (Amazon molly) ]

    Gene ID: 103134215, updated on 11-Mar-2024

    Summary

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    Gene symbol
    rpe
    Gene description
    ribulose-5-phosphate-3-epimerase
    See related
    Ensembl:ENSPFOG00000001914
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Poecilia formosa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
    Orthologs
    zebrafish all
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    Genomic context

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    See rpe in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799955.1 (341832..347678)

    NW_006799955.1Genomic Context describing neighboring genes Neighboring gene atypical chemokine receptor 3-like Neighboring gene uncharacterized LOC107835636 Neighboring gene uncharacterized LOC107835621 Neighboring gene immunoglobulin superfamily, member 3 Neighboring gene immunoglobulin superfamily member 3-like Neighboring gene kelch-like family member 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006799955.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables D-ribulose-phosphate 3-epimerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pentose-phosphate shunt IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pentose-phosphate shunt, non-oxidative branch IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribulose-phosphate 3-epimerase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Poecilia_formosa-5.1.2

    Genomic

    1. NW_006799955.1 Reference Poecilia_formosa-5.1.2

      Range
      341832..347678
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007546362.2 → XP_007546424.1  ribulose-phosphate 3-epimerase-like

      UniProtKB/TrEMBL
      A0A087X7U5
      Related
      ENSPFOP00000001848.1, ENSPFOT00000001852.1
      Conserved Domains (1) summary
      cd00429
      Location:30 → 238
      RPE; Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose ...
    Nucleotide Protein
    Heading Accession and Version

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