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    Fbxo16 F-box protein 16 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 305970, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Fbxo16provided by RGD
    Official Full Name
    F-box protein 16provided by RGD
    Primary source
    RGD:1305049
    See related
    EnsemblRapid:ENSRNOG00000014003 AllianceGenome:RGD:1305049
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human FBXO16 (F-box protein 16). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 21.6), Testes (RPKM 9.6) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fbxo16 in Genome Data Viewer
    Location:
    15p12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (43667207..43717096)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (39492268..39541493)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (48673172..48723358)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene exostosin-like glycosyltransferase 3 Neighboring gene uncharacterized LOC134482133 Neighboring gene H/ACA ribonucleoprotein complex subunit 3-like Neighboring gene frizzled class receptor 3 Neighboring gene uncharacterized LOC120097019 Neighboring gene zinc finger protein 395

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    F-box only protein 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013132.2 → NP_001013150.1  F-box only protein 16

      See identical proteins and their annotated locations for NP_001013150.1

      Status: PROVISIONAL

      Source sequence(s)
      BC062801
      UniProtKB/TrEMBL
      A6K6J3, E9PSV6, Q6P5P4
      Related
      ENSRNOP00000018762.6, ENSRNOT00000018762.9
      Conserved Domains (1) summary
      pfam12937
      Location:92 → 129
      F-box-like

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      43667207..43717096
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063274289.1 → XP_063130359.1  F-box only protein 16 isoform X3

      UniProtKB/TrEMBL
      A0A8I6A636

    2. XM_039093332.2 → XP_038949260.1  F-box only protein 16 isoform X1

      UniProtKB/TrEMBL
      A6K6J3, E9PSV6, Q6P5P4
      Conserved Domains (1) summary
      pfam12937
      Location:92 → 129
      F-box-like

    3. XM_063274288.1 → XP_063130358.1  F-box only protein 16 isoform X2

      UniProtKB/TrEMBL
      A0A8I6AGU5, A6K6J4

    4. XM_006252202.5 → XP_006252264.1  F-box only protein 16 isoform X3

      UniProtKB/TrEMBL
      A0A8I6A636
      Related
      ENSRNOP00000087577.1, ENSRNOT00000120133.2
      Conserved Domains (1) summary
      pfam12937
      Location:92 → 135
      F-box-like; F-box-like

    5. XM_063274290.1 → XP_063130360.1  F-box only protein 16 isoform X4

      UniProtKB/TrEMBL
      A0A8I6A636

    6. XM_039093333.2 → XP_038949261.1  F-box only protein 16 isoform X2

      UniProtKB/TrEMBL
      A0A8I6AGU5, A6K6J4
      Related
      ENSRNOP00000093989.1, ENSRNOT00000097526.2
      Conserved Domains (1) summary
      pfam12937
      Location:80 → 117
      F-box-like
    Nucleotide Protein Strain
    Heading Accession and Version

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