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    jade2 jade family PHD finger 2 [ Neolamprologus brichardi ]

    Gene ID: 102795243, updated on 10-Mar-2024

    Summary

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    Gene symbol
    jade2
    Gene description
    jade family PHD finger 2
    See related
    Ensembl:ENSNBRG00000007939
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Neolamprologus brichardi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Lamprologini; Neolamprologus
    Orthologs
    human zebrafish all
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    Genomic context

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    See jade2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current NeoBri1.0 (GCF_000239395.1) Unplaced Scaffold NW_006272008.1 (4921175..5142442)

    NW_006272008.1Genomic Context describing neighboring genes Neighboring gene CDKN2A interacting protein N-terminal like Neighboring gene ubiquitin-conjugating enzyme E2B (RAD6 homolog) Neighboring gene secretion associated, Ras related GTPase 1B Neighboring gene SEC24 homolog A, COPII coat complex component

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006272008 Unplaced Scaffold Reference NeoBri1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Jade-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Neolamprologus brichardi Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NeoBri1.0 Primary Assembly

    Genomic

    1. NW_006272008.1 Reference NeoBri1.0 Primary Assembly

      Range
      4921175..5142442
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006785027.1 → XP_006785090.1  protein Jade-1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q4GSY2
      Related
      ENSNBRP00000010223.1, ENSNBRT00000010511.1
      Conserved Domains (3) summary
      COG5141
      Location:134 → 577
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15680
      Location:198 → 243
      PHD_JADE2; PHD finger found in protein Jade-2 and similar proteins
      cd15705
      Location:251 → 361
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins

    2. XM_006785028.1 → XP_006785091.1  protein Jade-1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q4GMK5
      Related
      ENSNBRP00000010236.1, ENSNBRT00000010523.1
      Conserved Domains (4) summary
      COG5141
      Location:134 → 588
      COG5141; PHD zinc finger-containing protein [General function prediction only]
      cd15680
      Location:198 → 243
      PHD_JADE2; PHD finger found in protein Jade-2 and similar proteins
      cd15705
      Location:251 → 361
      ePHD_JADE2; Extended PHD finger found in protein Jade-2 and similar proteins
      pfam10513
      Location:134 → 172
      EPL1; Enhancer of polycomb-like
    Nucleotide Protein
    Heading Accession and Version

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