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    H257_17334 hypothetical protein [ Aphanomyces astaci ]

    Gene ID: 20819330, updated on 17-May-2024

    Summary

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    Gene symbol
    H257_17334
    Gene description
    hypothetical protein
    Locus tag
    H257_17334
    See related
    FungiDB:H257_17334; VEuPathDB:H257_17334
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Aphanomyces astaci (strain: APO3)
    Lineage
    Eukaryota; Stramenopiles; Oomycetes; Saprolegniales; Saprolegniaceae; Aphanomyces
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    Genomic context

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    See H257_17334 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    10

    NW_009798366.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene asparagine-tRNA ligase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009798366.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein demethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein
    hypothetical protein, variant 1
    hypothetical protein, variant 2
    hypothetical protein, variant 3

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_009798366.1 Reference assembly

      Range
      140098..142716
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009846081.1 → XP_009844383.1  hypothetical protein, variant 1 [Aphanomyces astaci]

      See identical proteins and their annotated locations for XP_009844383.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A418CGA6, W4FH56
      Conserved Domains (2) summary
      cd15556
      Location:526 → 574
      PHD_MMD1_like; PHD finger found in Arabidopsis thaliana PHD finger protein MALE MEIOCYTE DEATH 1 (MMD1), PHD finger protein MALE STERILITY 1 (MS1), and similar proteins
      cl22851
      Location:459 → 507
      PHD_SF; PHD finger superfamily

    2. XM_009846080.1 → XP_009844382.1  hypothetical protein H257_17334 [Aphanomyces astaci]

      See identical proteins and their annotated locations for XP_009844382.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A418CGA6, W4FHH4
      Conserved Domains (2) summary
      cd15556
      Location:544 → 592
      PHD_MMD1_like; PHD finger found in Arabidopsis thaliana PHD finger protein MALE MEIOCYTE DEATH 1 (MMD1), PHD finger protein MALE STERILITY 1 (MS1), and similar proteins
      cl22851
      Location:477 → 525
      PHD_SF; PHD finger superfamily

    3. XM_009846083.1 → XP_009844385.1  hypothetical protein, variant 3 [Aphanomyces astaci]

      See identical proteins and their annotated locations for XP_009844385.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A418CGA6, W4FHA1
      Conserved Domains (2) summary
      cd15556
      Location:403 → 451
      PHD_MMD1_like; PHD finger found in Arabidopsis thaliana PHD finger protein MALE MEIOCYTE DEATH 1 (MMD1), PHD finger protein MALE STERILITY 1 (MS1), and similar proteins
      cl22851
      Location:336 → 384
      PHD_SF; PHD finger superfamily

    4. XM_009846082.1 → XP_009844384.1  hypothetical protein, variant 2 [Aphanomyces astaci]

      See identical proteins and their annotated locations for XP_009844384.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A418CGA6, W4FFH3
      Conserved Domains (2) summary
      cd15556
      Location:473 → 521
      PHD_MMD1_like; PHD finger found in Arabidopsis thaliana PHD finger protein MALE MEIOCYTE DEATH 1 (MMD1), PHD finger protein MALE STERILITY 1 (MS1), and similar proteins
      cl22851
      Location:406 → 454
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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