U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    Slc7a6os solute carrier family 7, member 6 opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 66432, updated on 27-Nov-2024

    Summary

    Official Symbol
    Slc7a6osprovided by MGI
    Official Full Name
    solute carrier family 7, member 6 opposite strandprovided by MGI
    Primary source
    MGI:MGI:1916951
    See related
    Ensembl:ENSMUSG00000033106 AllianceGenome:MGI:1916951
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2010007L18Rik; 2400002F02Rik
    Summary
    Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including adrenal gland; early embryo; genitourinary system; liver; and spleen. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy. Orthologous to human SLC7A6OS (solute carrier family 7 member 6 opposite strand). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 15.5), limb E14.5 (RPKM 13.6) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Slc7a6os in Genome Data Viewer
    Location:
    8 D3; 8 53.11 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (106927070..106937565, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (106200438..106210933, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr8:108674075-108674376 Neighboring gene phospholipase A2, group XV Neighboring gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 6 Neighboring gene protein arginine N-methyltransferase 7 Neighboring gene sphingomyelin phosphodiesterase 3, neutral Neighboring gene RIKEN cDNA 4930506A18 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC60796

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in developmental process IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within hematopoietic progenitor cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    probable RNA polymerase II nuclear localization protein SLC7A6OS
    Names
    protein SLC7A6OS
    solute carrier family 7 member 6 opposite strand transcript homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007567.2NP_001007568.1  probable RNA polymerase II nuclear localization protein SLC7A6OS

      See identical proteins and their annotated locations for NP_001007568.1

      Status: VALIDATED

      Source sequence(s)
      AC133195, AK146733
      Consensus CDS
      CCDS22632.1
      UniProtKB/Swiss-Prot
      Q7TPE5
      Related
      ENSMUSP00000039029.6, ENSMUST00000035925.7
      Conserved Domains (1) summary
      pfam08574
      Location:191255
      DUF1762; Protein of unknown function (DUF1762)

    RNA

    1. NR_152744.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC133195

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      106927070..106937565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)