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    Fam204a family with sequence similarity 204, member A [ Mus musculus (house mouse) ]

    Gene ID: 76539, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Fam204aprovided by MGI
    Official Full Name
    family with sequence similarity 204, member Aprovided by MGI
    Primary source
    MGI:MGI:1289174
    See related
    Ensembl:ENSMUSG00000057858 AllianceGenome:MGI:1289174
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D19Ertd737e; 2310065H12Rik; 2610015K05Rik
    Summary
    Orthologous to human FAM204A (family with sequence similarity 204 member A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 6.1), CNS E14 (RPKM 3.6) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Fam204a in Genome Data Viewer
    Location:
    19 D3; 19 56.52 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (60187018..60215137, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (60197148..60226705, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA E330013P04 gene Neighboring gene STARR-seq mESC enhancer starr_46596 Neighboring gene predicted gene, 41881 Neighboring gene STARR-positive B cell enhancer ABC_E8760 Neighboring gene STARR-positive B cell enhancer mm9_chr19:60302488-60302789 Neighboring gene STARR-positive B cell enhancer ABC_E5714 Neighboring gene STARR-positive B cell enhancer mm9_chr19:60370481-60370782 Neighboring gene STARR-seq mESC enhancer starr_46597 Neighboring gene STARR-positive B cell enhancer mm9_chr19:60386552-60386852 Neighboring gene predicted gene, 41882 Neighboring gene predicted gene, 34300

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    2. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein FAM204A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358271.1 → NP_001345200.1  protein FAM204A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK075914, BC048505, BG069480

    2. NM_001358272.1 → NP_001345201.1  protein FAM204A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC102553

    3. NM_001358273.1 → NP_001345202.1  protein FAM204A isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC102553
      Consensus CDS
      CCDS29939.1
      UniProtKB/Swiss-Prot
      Q8C6C7
      UniProtKB/TrEMBL
      Q6P7X3
      Related
      ENSMUSP00000158259.2, ENSMUST00000238054.2

    4. NM_029648.7 → NP_083924.2  protein FAM204A isoform 1

      See identical proteins and their annotated locations for NP_083924.2

      Status: VALIDATED

      Source sequence(s)
      AK075914, BC048505, BG069480
      Consensus CDS
      CCDS29939.1
      UniProtKB/Swiss-Prot
      Q8C6C7
      UniProtKB/TrEMBL
      Q6P7X3
      Related
      ENSMUSP00000063913.2, ENSMUST00000065286.2

    RNA

    1. NR_152390.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) was represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
      Source sequence(s)
      AC102553

    2. NR_152391.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) was represented as non-coding because it lacks a large portion of the coding region, including the translational start codon, found in variant 1.
      Source sequence(s)
      AA990572, AK075914, BC048505, BG069480

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      60187018..60215137 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527444.4 → XP_006527507.1  protein FAM204A isoform X1

      See identical proteins and their annotated locations for XP_006527507.1

      UniProtKB/Swiss-Prot
      Q8C6C7
      UniProtKB/TrEMBL
      Q6P7X3

    2. XM_006527450.4 → XP_006527513.1  protein FAM204A isoform X2

      See identical proteins and their annotated locations for XP_006527513.1

    3. XM_006527447.4 → XP_006527510.1  protein FAM204A isoform X1

      See identical proteins and their annotated locations for XP_006527510.1

      UniProtKB/Swiss-Prot
      Q8C6C7
      UniProtKB/TrEMBL
      Q6P7X3

    4. XM_017318307.3 → XP_017173796.1  protein FAM204A isoform X2

    5. XM_006527445.4 → XP_006527508.1  protein FAM204A isoform X1

      See identical proteins and their annotated locations for XP_006527508.1

      UniProtKB/Swiss-Prot
      Q8C6C7
      UniProtKB/TrEMBL
      Q6P7X3

    6. XM_006527443.5 → XP_006527506.1  protein FAM204A isoform X1

      See identical proteins and their annotated locations for XP_006527506.1

      UniProtKB/Swiss-Prot
      Q8C6C7
      UniProtKB/TrEMBL
      Q6P7X3

    7. XM_036161723.1 → XP_036017616.1  protein FAM204A isoform X2

    8. XM_030251127.2 → XP_030106987.1  protein FAM204A isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8C6C7.1 GenPept UniProtKB/Swiss-Prot:Q8C6C7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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