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    Srrm3 serine/arginine repetitive matrix 3 [ Mus musculus (house mouse) ]

    Gene ID: 58212, updated on 9-Dec-2024

    Summary

    Official Symbol
    Srrm3provided by MGI
    Official Full Name
    serine/arginine repetitive matrix 3provided by MGI
    Primary source
    MGI:MGI:1920309
    See related
    Ensembl:ENSMUSG00000039860 AllianceGenome:MGI:1920309
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Srrm2l; SRm300-like; 2900083I11Rik
    Summary
    Predicted to enable mRNA binding activity. Predicted to be located in nucleus. Is expressed in brain; macula of utricle; and spinal cord. Orthologous to human SRRM3 (serine/arginine repetitive matrix 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in cerebellum adult (RPKM 10.3), frontal lobe adult (RPKM 8.1) and 6 other tissues See more
    Orthologs
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    Genomic context

    See Srrm3 in Genome Data Viewer
    Location:
    5 G2; 5 75.42 cM
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (135835693..135903627)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (135806860..135874773)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene serine/threonine/tyrosine interacting-like 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:136254330-136254517 Neighboring gene predicted gene, 30205 Neighboring gene malate dehydrogenase 2, NAD (mitochondrial) Neighboring gene STARR-positive B cell enhancer ABC_E6387 Neighboring gene predicted gene, 22450 Neighboring gene heat shock protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    serine/arginine repetitive matrix protein 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403221.1NP_001390150.1  serine/arginine repetitive matrix protein 3

      Status: VALIDATED

      Source sequence(s)
      AC083948, AC084162
      UniProtKB/Swiss-Prot
      Q80WV7, Q9CUV5, Q9JJ91
    2. NM_021403.3NP_067378.2  serine/arginine repetitive matrix protein 3

      See identical proteins and their annotated locations for NP_067378.2

      Status: VALIDATED

      Source sequence(s)
      BC051947, BC058385
      Consensus CDS
      CCDS39319.2
      UniProtKB/Swiss-Prot
      Q80WV7, Q9CUV5, Q9JJ91
      Related
      ENSMUSP00000115695.2, ENSMUST00000144211.2
      Conserved Domains (2) summary
      pfam15230
      Location:527583
      SRRM_C; Serine/arginine repetitive matrix protein C-terminus
      cd21376
      Location:34101
      cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      135835693..135903627
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504472.3XP_006504535.1  serine/arginine repetitive matrix protein 3 isoform X1

      See identical proteins and their annotated locations for XP_006504535.1

      UniProtKB/Swiss-Prot
      Q80WV7, Q9CUV5, Q9JJ91
      Conserved Domains (2) summary
      pfam15230
      Location:527583
      SRRM_C; Serine/arginine repetitive matrix protein C-terminus
      cd21376
      Location:34101
      cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins
    2. XM_036165389.1XP_036021282.1  serine/arginine repetitive matrix protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q80WV7, Q9CUV5, Q9JJ91
      Conserved Domains (2) summary
      pfam15230
      Location:527583
      SRRM_C; Serine/arginine repetitive matrix protein C-terminus
      cd21376
      Location:34101
      cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins
    3. XM_036165391.1XP_036021284.1  serine/arginine repetitive matrix protein 3 isoform X3

      Conserved Domains (1) summary
      pfam15230
      Location:233289
      SRRM_C; Serine/arginine repetitive matrix protein C-terminus
    4. XM_036165388.1XP_036021281.1  serine/arginine repetitive matrix protein 3 isoform X1

      UniProtKB/Swiss-Prot
      Q80WV7, Q9CUV5, Q9JJ91
      Conserved Domains (2) summary
      pfam15230
      Location:527583
      SRRM_C; Serine/arginine repetitive matrix protein C-terminus
      cd21376
      Location:34101
      cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins
    5. XM_036165390.1XP_036021283.1  serine/arginine repetitive matrix protein 3 isoform X3

      Conserved Domains (1) summary
      pfam15230
      Location:233289
      SRRM_C; Serine/arginine repetitive matrix protein C-terminus
    6. XM_036165392.1XP_036021285.1  serine/arginine repetitive matrix protein 3 isoform X4

      UniProtKB/TrEMBL
      H7BWX3
      Related
      ENSMUSP00000013615.8, ENSMUST00000013615.14
      Conserved Domains (1) summary
      cd21376
      Location:34101
      cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins
    7. XM_011240902.3XP_011239204.1  serine/arginine repetitive matrix protein 3 isoform X4

      UniProtKB/TrEMBL
      H7BWX3
      Conserved Domains (1) summary
      cd21376
      Location:34101
      cwf21_SRRM3; cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins
    8. XM_006504475.5XP_006504538.1  serine/arginine repetitive matrix protein 3 isoform X5

      Conserved Domains (2) summary
      PRK13411
      Location:49136
      PRK13411; molecular chaperone DnaK; Provisional
      pfam08312
      Location:5698
      cwf21; cwf21 domain
    9. XM_006504473.5XP_006504536.1  serine/arginine repetitive matrix protein 3 isoform X2

      Conserved Domains (1) summary
      pfam15230
      Location:408464
      SRRM_C; Serine/arginine repetitive matrix protein C-terminus