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    rad9b.L RAD9 checkpoint clamp component B L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 496251, updated on 27-Dec-2024

    Summary

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    Official Symbol
    rad9b.L
    Official Full Name
    RAD9 checkpoint clamp component B L homeolog
    Primary source
    Xenbase:XB-GENE-990520
    Locus tag
    XELAEV_18007844mg
    See related
    EnsemblRapid:ENSXLAG00005027854 AllianceGenome:Xenbase:XB-GENE-990520
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    rad9b
    Summary
    Predicted to act upstream of or within DNA damage checkpoint signaling and DNA repair. Predicted to be located in nucleus. Predicted to be part of checkpoint clamp complex. Orthologous to human RAD9B (RAD9 checkpoint clamp component B). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See rad9b.L in Genome Data Viewer
    Location:
    chromosome: 1L
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (176649079..176667292)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (163491149..163509341)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene anaphase promoting complex subunit 7 L homeolog Neighboring gene actin related protein 2/3 complex subunit 3 L homeolog Neighboring gene GPN-loop GTPase 3 L homeolog Neighboring gene vacuolar protein sorting-associated protein 29 Neighboring gene PTC7 protein phosphatase homolog L homeolog Neighboring gene tectonic family member 1 L homeolog Neighboring gene hydrogen voltage gated channel 1 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of checkpoint clamp complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cell cycle checkpoint control protein RAD9B
    Names
    RAD9 homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      176649079..176667292
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041567710.1 → XP_041423644.1  cell cycle checkpoint control protein RAD9B isoform X2

      UniProtKB/TrEMBL
      A0A8J1L269, Q5M7B6
      Related
      ENSXLAP00005082770.1, ENSXLAT00005084408.1
      Conserved Domains (1) summary
      cd00577
      Location:9 → 272
      PCNA; Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the ...

    2. XM_041567719.1 → XP_041423653.1  cell cycle checkpoint control protein RAD9B isoform X2

      UniProtKB/TrEMBL
      A0A8J1L269, Q5M7B6
      Conserved Domains (1) summary
      cd00577
      Location:9 → 272
      PCNA; Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the ...

    3. XM_041567707.1 → XP_041423641.1  cell cycle checkpoint control protein RAD9B isoform X2

      UniProtKB/TrEMBL
      A0A8J1L269, Q5M7B6
      Conserved Domains (1) summary
      cd00577
      Location:9 → 272
      PCNA; Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the ...

    4. XM_018224597.2 → XP_018080086.2  cell cycle checkpoint control protein RAD9B isoform X1

      UniProtKB/TrEMBL
      A0A8J0T8N3, Q5M7B6
      Conserved Domains (1) summary
      cd00577
      Location:34 → 297
      PCNA; Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the ...
    Nucleotide Protein Strain
    Heading Accession and Version

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