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    LOC17889812 putative E3 ubiquitin-protein ligase XBAT31 [ Capsella rubella ]

    Gene ID: 17889812, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC17889812
    Gene description
    putative E3 ubiquitin-protein ligase XBAT31
    Locus tag
    CARUB_v10023180mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Capsella rubella
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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    Genomic context

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    See LOC17889812 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238920.1 (6924309..6926858)

    NW_006238920.1Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L16, chloroplastic Neighboring gene U-box domain-containing protein 12 Neighboring gene uncharacterized LOC111831253 Neighboring gene uncharacterized LOC111831254

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006238920 Unplaced Scaffold Reference Caprub1_0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative E3 ubiquitin-protein ligase XBAT31

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Caprub1_0

    Genomic

    1. NW_006238920.1 Reference Caprub1_0

      Range
      6924309..6926858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006294124.2 → XP_006294186.1  putative E3 ubiquitin-protein ligase XBAT31

      See identical proteins and their annotated locations for XP_006294186.1

      UniProtKB/TrEMBL
      R0HCC2
      Conserved Domains (4) summary
      cd00204
      Location:44 → 178
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:117 → 225
      Ank_2; Ankyrin repeats (3 copies)
      pfam13920
      Location:319 → 376
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      sd00045
      Location:47 → 76
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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