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    UPF3B UPF3B regulator of nonsense mediated mRNA decay [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102366445, updated on 30-Apr-2024

    Summary

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    Gene symbol
    UPF3B
    Gene description
    UPF3B regulator of nonsense mediated mRNA decay
    See related
    Ensembl:ENSLACG00000008691
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Orthologs
    human zebrafish all
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    Genomic context

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    See UPF3B in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 15 NC_088153.1 (12880686..12891913)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819986.1 (363239..374469)

    Chromosome 15 - NC_088153.1Genomic Context describing neighboring genes Neighboring gene A-kinase anchoring protein 14 Neighboring gene NADH:ubiquinone oxidoreductase subunit A1 Neighboring gene small nucleolar RNA SNORA69 Neighboring gene ribosomal protein L39 Neighboring gene sosondowah ankyrin repeat domain family d

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of nonsense transcripts 3B
    Names
    UPF3 regulator of nonsense transcripts homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088153.1 Reference fLatCha1.pri

      Range
      12880686..12891913
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006003858.2 → XP_006003920.1  regulator of nonsense transcripts 3B

      UniProtKB/TrEMBL
      H3AJN5
      Related
      ENSLACP00000009856.1
      Conserved Domains (1) summary
      pfam03467
      Location:36 → 191
      Smg4_UPF3; Smg-4/UPF3 family
    Nucleotide Protein
    Heading Accession and Version

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