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    MTM1 myotubularin 1 [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102351041, updated on 12-Sep-2024

    Summary

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    Gene symbol
    MTM1
    Gene description
    myotubularin 1
    See related
    Ensembl:ENSLACG00000014251
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Orthologs
    zebrafish all
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    Genomic context

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    See MTM1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 15 NC_088153.1 (14834451..14884173, complement)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819119.1 (991613..1041088)

    Chromosome 15 - NC_088153.1Genomic Context describing neighboring genes Neighboring gene high mobility group protein B3 Neighboring gene CD99 molecule-like 2 Neighboring gene myotubularin-related protein 1 Neighboring gene mastermind-like domain-containing protein 1 Neighboring gene ASCH domain-containing protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3-phosphate phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrion distribution IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle cell cellular homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myotubularin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088153.1 Reference fLatCha1.pri

      Range
      14834451..14884173 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014486027.2 → XP_014341513.1  myotubularin isoform X2

      UniProtKB/TrEMBL
      H3B2Q8
      Related
      ENSLACP00000016179.2

    2. XM_005991838.3 → XP_005991900.1  myotubularin isoform X1

      See identical proteins and their annotated locations for XP_005991900.1

      Conserved Domains (2) summary
      pfam06602
      Location:148 → 481
      Myotub-related; Myotubularin-like phosphatase domain
      cl17171
      Location:42 → 141
      PH-like; Pleckstrin homology-like domain

    3. XM_064566556.1 → XP_064422626.1  myotubularin isoform X2

      UniProtKB/TrEMBL
      H3B2Q8

    4. XM_005991839.3 → XP_005991901.1  myotubularin isoform X1

      See identical proteins and their annotated locations for XP_005991901.1

      Conserved Domains (2) summary
      pfam06602
      Location:148 → 481
      Myotub-related; Myotubularin-like phosphatase domain
      cl17171
      Location:42 → 141
      PH-like; Pleckstrin homology-like domain

    5. XM_005991837.3 → XP_005991899.1  myotubularin isoform X1

      See identical proteins and their annotated locations for XP_005991899.1

      Conserved Domains (2) summary
      pfam06602
      Location:148 → 481
      Myotub-related; Myotubularin-like phosphatase domain
      cl17171
      Location:42 → 141
      PH-like; Pleckstrin homology-like domain
    Nucleotide Protein
    Heading Accession and Version

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