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    NUP58 nucleoporin 58 [ Latimeria chalumnae (coelacanth) ]

    Gene ID: 102354392, updated on 4-May-2024

    Summary

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    Gene symbol
    NUP58
    Gene description
    nucleoporin 58
    See related
    Ensembl:ENSLACG00000015994
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Latimeria chalumnae
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Coelacanthiformes; Coelacanthidae; Latimeria
    Also known as
    NUPL1
    Orthologs
    human zebrafish all
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    Genomic context

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    See NUP58 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_04 current fLatCha1.pri (GCF_037176945.1) 4 NC_088142.1 (194412927..194466712, complement)
    101 previous assembly LatCha1 (GCF_000225785.1) Unplaced Scaffold NW_005819078.1 (1422867..1476446)

    Chromosome 4 - NC_088142.1Genomic Context describing neighboring genes Neighboring gene phospholipid-transporting ATPase IB-like Neighboring gene protein shisa-2 Neighboring gene 5S ribosomal RNA Neighboring gene myotubularin related protein 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear localization sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleocytoplasmic transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleoporin p58/p45
    Names
    nucleoporin like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_037176945.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fLatCha1.pri

    Genomic

    1. NC_088142.1 Reference fLatCha1.pri

      Range
      194412927..194466712 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005990542.3 → XP_005990604.1  nucleoporin p58/p45

      UniProtKB/TrEMBL
      H3B8D5
      Related
      ENSLACP00000018156.2
      Conserved Domains (3) summary
      pfam10154
      Location:248 → 492
      DUF2362; Uncharacterized conserved protein (DUF2362)
      pfam15967
      Location:36 → 604
      Nucleoporin_FG2; Nucleoporin FG repeated region
      cl00143
      Location:350 → 445
      SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...

    RNA

    1. XR_001352570.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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