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    FAM120B family with sequence similarity 120 member B [ Homo sapiens (human) ]

    Gene ID: 84498, updated on 10-Dec-2024

    Summary

    Official Symbol
    FAM120Bprovided by HGNC
    Official Full Name
    family with sequence similarity 120 member Bprovided by HGNC
    Primary source
    HGNC:HGNC:21109
    See related
    Ensembl:ENSG00000112584 MIM:612266; AllianceGenome:HGNC:21109
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CCPG; SAN1; PGCC1; KIAA1838; dJ894D12.1
    Summary
    Predicted to be involved in fat cell differentiation and peroxisome proliferator activated receptor signaling pathway. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in brain (RPKM 5.9), thyroid (RPKM 5.7) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See FAM120B in Genome Data Viewer
    Location:
    6q27
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (170290703..170407067)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (171649394..171778062)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (170599791..170716155)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC154449 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:170575708-170576284 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:170576285-170576861 Neighboring gene uncharacterized LOC285804 Neighboring gene long intergenic non-protein coding RNA 1624 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:170591232-170592431 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr6:170604755-170605382 Neighboring gene delta like canonical Notch ligand 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_91390 Neighboring gene microRNA 4644 Neighboring gene NANOG hESC enhancer GRCh37_chr6:170664768-170665298 Neighboring gene uncharacterized LOC124901474 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:170695897-170697096 Neighboring gene uncharacterized LOC124901475 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:170712439-170713033 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170742555-170743054 Neighboring gene Sharpr-MPRA regulatory region 11687 Neighboring gene uncharacterized LOC107986676 Neighboring gene VISTA enhancer hs1310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:170749082-170749660 Neighboring gene uncharacterized LOC124901477 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:170752981-170753211

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Phenotypes

    EBI GWAS Catalog

    Description
    A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.
    EBI GWAS Catalog

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ55614, KIAA0183

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in fat cell differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in peroxisome proliferator activated receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    constitutive coactivator of peroxisome proliferator-activated receptor gamma
    Names
    PPARG constitutive coactivator 1
    PPARgamma constitutive coactivator 1
    constitutive coactivator of PPAR-gamma
    family with sequence similarity 120B
    senataxin-associated nuclease 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001286379.2NP_001273308.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes isoform a.
      Source sequence(s)
      AJ420589, AK294415, AK299890, AL008628
      Consensus CDS
      CCDS78200.1
      UniProtKB/TrEMBL
      A0A0D9SEJ5, B4DG54
      Related
      ENSP00000485745.1, ENST00000630384.2
      Conserved Domains (2) summary
      pfam12813
      Location:168241
      XPG_I_2; XPG domain containing
      pfam15548
      Location:318507
      DUF4655; Domain of unknown function (DUF4655)
    2. NM_001286380.2NP_001273309.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate 5' exon and it thus differs in the 5' UTR and 5' coding region, compared to variant 1. The encoded isoform (b) has a distinct N-terminus and is longer than isoform a.
      Source sequence(s)
      AJ420589, AK294415, AK299890, AL008628
      Consensus CDS
      CCDS75555.1
      UniProtKB/TrEMBL
      B4DSS4, F5GY05
      Related
      ENSP00000440125.1, ENST00000537664.5
      Conserved Domains (2) summary
      pfam12813
      Location:179252
      XPG_I_2; XPG domain containing
      pfam15548
      Location:329518
      DUF4655; Domain of unknown function (DUF4655)
    3. NM_001286381.2NP_001273310.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform d

      See identical proteins and their annotated locations for NP_001273310.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) contains an alternate 5' exon and lacks two additional exons in the 5' coding region, and it thus differs in its 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (d) is shorter at the N-terminus, compared to isoform a.
      Source sequence(s)
      AJ420589, AK296825, AL008628
      Consensus CDS
      CCDS69243.1
      UniProtKB/Swiss-Prot
      Q96EK7
      Related
      ENSP00000485793.1, ENST00000625626.1
    4. NM_032448.3NP_115824.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform c

      See identical proteins and their annotated locations for NP_115824.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains an alternate 5' exon and it thus differs in its 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (c) is shorter at the N-terminus, compared to isoform a.
      Source sequence(s)
      AJ420589, AK299890, AL008628, DQ873695
      Consensus CDS
      CCDS5314.1
      UniProtKB/Swiss-Prot
      B4DL34, Q86V68, Q96EK7, Q96JI9
      UniProtKB/TrEMBL
      B4DG54
      Related
      ENSP00000417970.1, ENST00000476287.4
      Conserved Domains (2) summary
      pfam12813
      Location:156229
      XPG_I_2; XPG domain containing
      pfam15548
      Location:306495
      DUF4655; Domain of unknown function (DUF4655)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      170290703..170407067
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024446569.2XP_024302337.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X1

      UniProtKB/TrEMBL
      B4DG54
      Conserved Domains (1) summary
      pfam15548
      Location:306495
      DUF4655; Domain of unknown function (DUF4655)
    2. XM_047419415.1XP_047275371.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X8

    3. XM_011536185.4XP_011534487.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X7

      See identical proteins and their annotated locations for XP_011534487.1

      Conserved Domains (2) summary
      pfam12813
      Location:156229
      XPG_I_2; XPG domain containing
      pfam15548
      Location:318495
      DUF4655; Domain of unknown function (DUF4655)
    4. XM_017011359.3XP_016866848.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X5

    5. XM_017011360.3XP_016866849.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X6

    6. XM_047419414.1XP_047275370.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X3

      UniProtKB/TrEMBL
      B4DG54
    7. XM_024446570.2XP_024302338.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X2

      UniProtKB/TrEMBL
      B4DG54
      Conserved Domains (1) summary
      pfam15548
      Location:306495
      DUF4655; Domain of unknown function (DUF4655)
    8. XM_017011358.3XP_016866847.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X4

    RNA

    1. XR_002956306.2 RNA Sequence

    2. XR_007059342.1 RNA Sequence

    3. XR_007059343.1 RNA Sequence

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187553.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      17941..143628
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054328685.1XP_054184660.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X1

      UniProtKB/TrEMBL
      B4DG54
    2. XM_054328689.1XP_054184664.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X8

    3. XM_054328688.1XP_054184663.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X7

    4. XM_054328686.1XP_054184661.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X2

      UniProtKB/TrEMBL
      B4DG54
    5. XM_054328687.1XP_054184662.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X4

    RNA

    1. XR_008485607.1 RNA Sequence

    2. XR_008485604.1 RNA Sequence

    3. XR_008485609.1 RNA Sequence

    4. XR_008485610.1 RNA Sequence

    5. XR_008485606.1 RNA Sequence

    6. XR_008485605.1 RNA Sequence

    7. XR_008485608.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      171649394..171778062
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054356552.1XP_054212527.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X1

      UniProtKB/TrEMBL
      B4DG54
    2. XM_054356559.1XP_054212534.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X8

    3. XM_054356558.1XP_054212533.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X7

    4. XM_054356556.1XP_054212531.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X5

    5. XM_054356557.1XP_054212532.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X6

    6. XM_054356554.1XP_054212529.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X3

      UniProtKB/TrEMBL
      B4DG54
    7. XM_054356553.1XP_054212528.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X2

      UniProtKB/TrEMBL
      B4DG54
    8. XM_054356555.1XP_054212530.1  constitutive coactivator of peroxisome proliferator-activated receptor gamma isoform X4

    RNA

    1. XR_008487444.1 RNA Sequence

    2. XR_008487445.1 RNA Sequence

    3. XR_008487446.1 RNA Sequence