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    LOC18447986 tobamovirus multiplication protein 1 [ Amborella trichopoda ]

    Gene ID: 18447986, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18447986
    Gene description
    tobamovirus multiplication protein 1
    Locus tag
    AMTR_s00062p00114880
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    See LOC18447986 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006500347.1 (1480919..1493445)

    NW_006500347.1Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase 35 Neighboring gene probable folate-biopterin transporter 4 Neighboring gene derlin-2 Neighboring gene dCTP pyrophosphatase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006500347.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plant-type vacuole membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tobamovirus multiplication protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006500347.1 Reference AMTR1.0 Primary Assembly

      Range
      1480919..1493445
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020675928.1 → XP_020531587.1  tobamovirus multiplication protein 1 isoform X2

      UniProtKB/TrEMBL
      U5D1W7
      Conserved Domains (1) summary
      pfam06454
      Location:15 → 285
      DUF1084; Protein of unknown function (DUF1084)

    2. XM_011630148.2 → XP_011628450.1  tobamovirus multiplication protein 1 isoform X2

      See identical proteins and their annotated locations for XP_011628450.1

      UniProtKB/TrEMBL
      U5D1W7
      Conserved Domains (1) summary
      pfam06454
      Location:15 → 285
      DUF1084; Protein of unknown function (DUF1084)

    3. XM_020675927.1 → XP_020531586.1  tobamovirus multiplication protein 1 isoform X1

      UniProtKB/TrEMBL
      U5D1W7
      Conserved Domains (1) summary
      pfam06454
      Location:54 → 324
      DUF1084; Protein of unknown function (DUF1084)

    4. XM_020675929.1 → XP_020531588.1  tobamovirus multiplication protein 1 isoform X3

      Conserved Domains (1) summary
      pfam06454
      Location:54 → 252
      DUF1084; Protein of unknown function (DUF1084)
    Nucleotide Protein
    Heading Accession and Version

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