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    RNF13 ring finger protein 13 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100399753, updated on 8-Mar-2024

    Summary

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    Gene symbol
    RNF13
    Gene description
    ring finger protein 13
    See related
    Ensembl:ENSCJAG00000001297
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See RNF13 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 17 NC_071458.1 (28313009..28497163, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 17 NC_048399.1 (28478714..28663046, complement)

    Chromosome 17 - NC_071458.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit J-like Neighboring gene uncharacterized LOC108588814 Neighboring gene nucleophosmin-like Neighboring gene profilin 2 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC128929989 Neighboring gene ankyrin repeat and ubiquitin domain containing 1 Neighboring gene 60S ribosomal protein L27-like Neighboring gene COMM domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNF13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071458.1 Reference mCalJa1.2.pat.X

      Range
      28313009..28497163 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002759497.6 → XP_002759543.1  E3 ubiquitin-protein ligase RNF13 isoform X1

      See identical proteins and their annotated locations for XP_002759543.1

      UniProtKB/TrEMBL
      F7HBJ4, F7ITD6, U3EPW6
      Related
      ENSCJAP00000002292.2
      Conserved Domains (2) summary
      cd02123
      Location:23 → 180
      PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
      cd16797
      Location:238 → 283
      RING-H2_RNF167; RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins

    2. XM_035278324.2 → XP_035134215.1  E3 ubiquitin-protein ligase RNF13 isoform X2

      Conserved Domains (3) summary
      cd00162
      Location:121 → 162
      RING_Ubox; RING-H2 finger (C3H2C3-type) [structural motif]
      cl28883
      Location:21 → 61
      PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
      cl17238
      Location:119 → 164
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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