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    SYP23 syntaxin of plants 23 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827494, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SYP23
    Official Full Name
    syntaxin of plants 23
    Primary source
    TAIR:AT4G17730
    Locus tag
    AT4G17730
    See related
    Araport:AT4G17730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSYP23; DL4901W; FCAALL.117; syntaxin of plants 23; syntaxin of plants 23
    Summary
    member of SYP2 Gene Family
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    Genomic context

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    See SYP23 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Sequence:
    Chromosome: 4; NC_003075.7 (9865103..9867022)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Defensin-like (DEFL) family protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene Peptidase S41 family protein Neighboring gene heat shock factor 1 Neighboring gene PCNA domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant SNAREs SYP22 and SYP23 interact with Tobacco mosaic virus 126 kDa protein and SYP2s are required for normal local virus accumulation and spread. Ibrahim A, et al. Virology, 2020 Aug. PMID 32560905
    2. Arabidopsis Qa-SNARE SYP2 proteins localized to different subcellular regions function redundantly in vacuolar protein sorting and plant development. Shirakawa M, et al. Plant J, 2010 Dec. PMID 21143674
    3. Protein disulfide isomerase-2 of Arabidopsis mediates protein folding and localizes to both the secretory pathway and nucleus, where it interacts with maternal effect embryo arrest factor. Cho EJ, et al. Mol Cells, 2011 Nov. PMID 21909944, Free PMC Article
    4. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Sanderfoot AA, et al. Plant Physiol, 2000 Dec. PMID 11115874, Free PMC Article
    5. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Plant SNAREs SYP22 and SYP23 interact with Tobacco mosaic virus 126 kDa protein and SYP2s are required for normal local virus accumulation and spread.
      Title: Plant SNAREs SYP22 and SYP23 interact with Tobacco mosaic virus 126 kDa protein and SYP2s are required for normal local virus accumulation and spread.
    2. SYP21, SYP22 and SYP23 function redundantly in vacuolar protein transport, vein patterning, myrosin cell differentiation and plant growth.
      Title: Arabidopsis Qa-SNARE SYP2 proteins localized to different subcellular regions function redundantly in vacuolar protein sorting and plant development.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084934.1
    NM_117882.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables SNAP receptor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within detection of virus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within intracellular protein transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within membrane fusion TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    syntaxin of plants 23
    NP_001078403.1
    • syntaxin of plants 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1); Has 1783 Blast hits to 1783 proteins in 244 species: Archae - 0; Bacteria - 6; Metazoa - 845; Fungi - 276; Plants - 461; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).
    NP_567537.1
    • syntaxin of plants 23 (SYP23); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT5G46860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9865103..9867022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117882.3 → NP_567537.1  syntaxin of plants 23 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567537.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04378, O23613
      UniProtKB/TrEMBL
      A0A178V056
      Conserved Domains (2) summary
      cd15840
      Location:187 → 245
      SNARE_Qa; SNARE motif, subgroup Qa
      pfam14523
      Location:33 → 133
      Syntaxin_2; Syntaxin-like protein

    2. NM_001084934.1 → NP_001078403.1  syntaxin of plants 23 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078403.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V056, A8MS65
      Conserved Domains (2) summary
      cd15840
      Location:204 → 245
      SNARE_Qa; SNARE motif, subgroup Qa
      pfam14523
      Location:33 → 133
      Syntaxin_2; Syntaxin-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04378.1

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