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    REP15 RAB15 effector protein [ Ficedula albicollis (Collared flycatcher) ]

    Gene ID: 101812809, updated on 3-Aug-2024

    Summary

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    Gene symbol
    REP15
    Gene description
    RAB15 effector protein
    See related
    Ensembl:ENSFALG00000015072
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ficedula albicollis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
    Orthologs
    human mouse all
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    Genomic context

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    See REP15 in Genome Data Viewer
    Location:
    chromosome: 1A
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current FicAlb1.5 (GCF_000247815.1) 1A NC_021672.1 (67631266..67633715)

    Chromosome 1A - NC_021672.1Genomic Context describing neighboring genes Neighboring gene NADH-cytochrome b5 reductase 3-like Neighboring gene PPFIA binding protein 1 Neighboring gene basic helix-loop-helix ARNT like 2 Neighboring gene uncharacterized LOC107604599 Neighboring gene serine/threonine kinase 38 like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_021672.1 Chromosome 1A Reference FicAlb1.5 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in receptor recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rab15 effector protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference FicAlb1.5 Primary Assembly

    Genomic

    1. NC_021672.1 Reference FicAlb1.5 Primary Assembly

      Range
      67631266..67633715
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005040242.1 → XP_005040299.1  rab15 effector protein

      UniProtKB/TrEMBL
      U3KKY3
      Related
      ENSFALP00000015687.1, ENSFALT00000015752.2
      Conserved Domains (1) summary
      pfam15208
      Location:10 → 244
      Rab15_effector; Rab15 effector
    Nucleotide Protein
    Heading Accession and Version

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