U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC101776813 DEAD-box ATP-dependent RNA helicase 7 [ Setaria italica (foxtail millet) ]

    Gene ID: 101776813, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC101776813
    Gene description
    DEAD-box ATP-dependent RNA helicase 7
    Locus tag
    SETIT_029100mg
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Setaria italica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC101776813 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Setaria_italica_v2.0 (GCF_000263155.2) II NC_028451.1 (37654695..37659200)
    101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675962.1 (37655476..37659957)

    Chromosome II - NC_028451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101776014 Neighboring gene probable sodium/metabolite cotransporter BASS5, chloroplastic Neighboring gene putative alpha-L-fucosidase 1 Neighboring gene 3-ketoacyl-CoA synthase 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    DEAD-box ATP-dependent RNA helicase 7

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Setaria_italica_v2.0 Primary Assembly

    Genomic

    1. NC_028451.1 Reference Setaria_italica_v2.0 Primary Assembly

      Range
      37654695..37659200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004957334.3 → XP_004957391.1  DEAD-box ATP-dependent RNA helicase 7

      UniProtKB/TrEMBL
      A0A368Q3F3, K3ZR70
      Conserved Domains (2) summary
      COG0513
      Location:124 → 508
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      pfam08152
      Location:558 → 648
      GUCT; GUCT (NUC152) domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases