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    LOC4340980 GDSL esterase/lipase EXL1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340980, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340980
    Gene description
    GDSL esterase/lipase EXL1
    Locus tag
    OSNPB_060351500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340980 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (14466397..14475887)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (14281500..14290786)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281226 Neighboring gene pathogenesis-related protein PRB1-3 Neighboring gene uncharacterized LOC107281327 Neighboring gene GDSL esterase/lipase At3g14820

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDSL esterase/lipase EXL1; GDSL esterase/lipase EXL3
    Names
    OSJNBb0014G01.31
    Os06g0351500
    putative family II extracellular lipase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      14466397..14475887
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787067.3 → XP_015642553.1  GDSL esterase/lipase EXL1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WWK4, B8B1Q2, Q69LT9
      Conserved Domains (1) summary
      cd01837
      Location:60 → 371
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...

    2. XM_026025969.2 → XP_025881754.1  GDSL esterase/lipase EXL3 isoform X2

      UniProtKB/TrEMBL
      A3BBK0
      Conserved Domains (1) summary
      cd01837
      Location:146 → 407
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
    Nucleotide Protein
    Heading Accession and Version

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