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    ybeY rRNA maturation RNase YbeY [ Edwardsiella piscicida ]

    Gene ID: 72529418, updated on 3-Dec-2024

    Summary

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    Gene symbol
    ybeY
    Gene description
    rRNA maturation RNase YbeY
    Locus tag
    L1P05_RS12610
    Gene type
    protein coding
    Organism
    Edwardsiella piscicida (strain: 18EpOKYJ, nat-host: Paralichthtys olivaceus (Olive flounder))
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Edwardsiella
    Old locus tag
    L1P05_12610
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    Genomic context

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    NZ_CP090968.1Genomic Context describing neighboring genes Neighboring gene AbgT family transporter Neighboring gene PhoH family protein Neighboring gene CNNM family magnesium/cobalt transport protein CorC Neighboring gene apolipoprotein N-acyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP090968.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The RNase YbeY Is Vital for Ribosome Maturation, Stress Resistance, and Virulence of the Natural Genetic Engineer Agrobacterium tumefaciens. Möller P, et al. J Bacteriol, 2019 Jun 1. PMID 30885931, Free PMC Article
    2. The ybeY protein from Escherichia coli is a metalloprotein. Zhan C, et al. Acta Crystallogr Sect F Struct Biol Cryst Commun, 2005 Nov 1. PMID 16511207, Free PMC Article
    3. Conserved bacterial RNase YbeY plays key roles in 70S ribosome quality control and 16S rRNA maturation. Jacob AI, et al. Mol Cell, 2013 Feb 7. PMID 23273979, Free PMC Article
    4. Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing. Davies BW, et al. Mol Microbiol, 2010 Oct. PMID 20807199, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    rRNA maturation RNase YbeY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP090968.1 Reference assembly

      Range
      2769017..2769490
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_012849456.1 rRNA maturation RNase YbeY [Edwardsiella piscicida]

      See identical proteins and their annotated locations for WP_012849456.1

      UniProtKB/TrEMBL
      A0A0H3DT68, A0AAQ3H2Z6, A0AAU8P685
      Conserved Domains (1) summary
      COG0319
      Location:4 → 153
      YbeY; ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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