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    HMPREF9448_RS00525 RagB/SusD family nutrient uptake outer membrane protein [ Barnesiella intestinihominis YIT 11860 ]

    Gene ID: 77847482, updated on 11-Dec-2024

    Summary

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    Gene symbol
    HMPREF9448_RS00525
    Gene description
    RagB/SusD family nutrient uptake outer membrane protein
    Locus tag
    HMPREF9448_RS00525
    Gene type
    protein coding
    Organism
    Barnesiella intestinihominis YIT 11860 (strain: YIT 11860, type-material: type strain of Barnesiella intestinihominis)
    Lineage
    Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Barnesiellaceae; Barnesiella
    Old locus tag
    HMPREF9448_00107
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    Genomic context

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    NZ_JH815203.1Genomic Context describing neighboring genes Neighboring gene FecR family protein Neighboring gene TonB-dependent receptor Neighboring gene DUF4832 domain-containing protein Neighboring gene FISUMP domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_JH815203.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure of RagB, a major immunodominant outer-membrane surface receptor antigen of Porphyromonas gingivalis. Goulas T, et al. Mol Oral Microbiol, 2016 Dec. PMID 26441291, Free PMC Article
    2. Glycan recognition by the Bacteroidetes Sus-like systems. Bolam DN, et al. Curr Opin Struct Biol, 2012 Oct. PMID 22819666

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    RagB/SusD family nutrient uptake outer membrane protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_JH815203.1 Reference assembly

      Range
      136824..138353
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_008860737.1 MULTISPECIES: RagB/SusD family nutrient uptake outer membrane protein [Barnesiella]

      See identical proteins and their annotated locations for WP_008860737.1

      UniProtKB/TrEMBL
      K0X3L3
      Conserved Domains (2) summary
      pfam07980
      Location:279 → 508
      SusD_RagB; SusD family
      cl21747
      Location:37 → 469
      SusD; starch binding outer membrane protein SusD
    Nucleotide Protein
    Heading Accession and Version

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