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    HMPREF1534_RS05080 NYN domain-containing protein [ Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 ]

    Gene ID: 60061202, updated on 9-Jan-2025

    Summary

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    Gene symbol
    HMPREF1534_RS05080
    Gene description
    NYN domain-containing protein
    Locus tag
    HMPREF1534_RS05080
    Gene type
    protein coding
    Organism
    Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM 13223 (strain: DSM 17679, type-material: type strain of Bacteroides massiliensis)
    Lineage
    Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
    Old locus tag
    HMPREF1534_02912
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    Genomic context

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    NZ_KB905473.1Genomic Context describing neighboring genes Neighboring gene phosphoribosyltransferase Neighboring gene helix-turn-helix domain-containing protein Neighboring gene PRTRC system ThiF family protein Neighboring gene prokaryotic E2 ligase family D protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_KB905473.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The NYN domains: novel predicted RNAses with a PIN domain-like fold. Anantharaman V, et al. RNA Biol, 2006 Jan-Mar. PMID 17114934

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    NYN domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_KB905473.1 Reference assembly

      Range
      274167..274871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005942662.1 MULTISPECIES: NYN domain-containing protein [Bacteroidales]

      See identical proteins and their annotated locations for WP_005942662.1

      UniProtKB/TrEMBL
      A0A9Q4IQ70, A0AAE4II66, U6RCS1
      Conserved Domains (2) summary
      cd10146
      Location:164 → 231
      LabA_like_C; C-terminal domain of LabA_like proteins
      cd11297
      Location:11 → 127
      PIN_LabA-like_N_1; uncharacterized subfamily of N-terminal LabA-like PIN domains
    Nucleotide Protein
    Heading Accession and Version

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