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    INE72_RS11090 RagB/SusD family nutrient uptake outer membrane protein [ Bacteroides caccae CL03T12C61 ]

    Gene ID: 75113396, updated on 1-Aug-2024

    Summary

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    Gene symbol
    INE72_RS11090
    Gene description
    RagB/SusD family nutrient uptake outer membrane protein
    Locus tag
    INE72_RS11090
    Gene type
    protein coding
    Organism
    Bacteroides caccae CL03T12C61 (strain: CL03T12C61, nat-host: Homo sapiens)
    Lineage
    Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
    Old locus tag
    INE72_02205
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    Genomic context

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    NZ_CP072258.1Genomic Context describing neighboring genes Neighboring gene IS4-like element ISBf8 family transposase Neighboring gene TonB-dependent receptor Neighboring gene beta-glucosidase Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP072258.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structure of RagB, a major immunodominant outer-membrane surface receptor antigen of Porphyromonas gingivalis. Goulas T, et al. Mol Oral Microbiol, 2016 Dec. PMID 26441291, Free PMC Article
    2. Glycan recognition by the Bacteroidetes Sus-like systems. Bolam DN, et al. Curr Opin Struct Biol, 2012 Oct. PMID 22819666
    3. Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering. García-Bayona L, et al. PLoS Genet, 2021 Apr. PMID 33901198, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    RagB/SusD family nutrient uptake outer membrane protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP072258.1 Reference assembly

      Range
      2790775..2792511
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_005680232.1 MULTISPECIES: RagB/SusD family nutrient uptake outer membrane protein [Bacteroides]

      See identical proteins and their annotated locations for WP_005680232.1

      UniProtKB/TrEMBL
      A0A174R4G6, I8V871
      Conserved Domains (2) summary
      pfam07980
      Location:277 → 576
      SusD_RagB; SusD family
      cl21747
      Location:28 → 212
      SusD; starch binding outer membrane protein SusD
    Nucleotide Protein
    Heading Accession and Version

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