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    Z-ISO 15-cis-zeta-carotene isomerase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837626, updated on 18-Sep-2024

    Summary

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    Official Symbol
    Z-ISO
    Official Full Name
    15-cis-zeta-carotene isomerase
    Primary source
    TAIR:AT1G10830
    Locus tag
    AT1G10830
    See related
    Araport:AT1G10830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    15-cis-zeta-carotene isomerase; T16B5.3; T16B5_3; Z-ISO1.1; Z-ISO1.2
    Summary
    Encodes a functional 15-cis-zeta-carotene isomerase (Z-ISO).
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    Genomic context

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    See Z-ISO in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (3605512..3607580, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene hypothetical protein (DUF3755) Neighboring gene translation initiation factor 3 subunit H1 Neighboring gene ncRNA Neighboring gene Leucine-rich repeat protein kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoid biosynthesis in plants. Chen Y, et al. Plant Physiol, 2010 May. PMID 20335404, Free PMC Article
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Z-ISO is a chloroplast-localized protein that plays a role in carotenoid biosynthesis.
      Title: Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoid biosynthesis in plants.
    2. At1g10830.1 encodes 15 cis zetacarotene isomerase (Z-ISO), a new enzyme required for carotenoid biosynthesis in plants. The shorter transcript At1g10830.2 gene product does not have enzyme activity. [Z-ISO]
      Title: Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoid biosynthesis in plants.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    NM_001123792.1
    NM_001331932.1
    NM_100959.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 9,15,9'-tri-cis-zeta-carotene isomerase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within carotene biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    15-cis-zeta-carotene isomerase
    NP_001117264.1
    • 15-cis-zeta-carotene isomerase (Z-ISO); FUNCTIONS IN: 9,15,9'-tri-cis-zeta-carotene isomerase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NnrU (InterPro:IPR009915); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_563879.1
    • 15-cis-zeta-carotene isomerase (Z-ISO); FUNCTIONS IN: 9,15,9'-tri-cis-zeta-carotene isomerase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NnrU (InterPro:IPR009915); Has 373 Blast hits to 373 proteins in 102 species: Archae - 0; Bacteria - 164; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3605512..3607580 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100959.5 → NP_563879.1  15-cis-zeta-carotene isomerase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563879.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3H769, Q8LD73, Q9SAC0
      UniProtKB/TrEMBL
      A0A178W2K4, A0A5S9TQ56, A0A654E8S1
      Conserved Domains (1) summary
      COG4094
      Location:140 → 367
      COG4094; Uncharacterized membrane protein [Function unknown]

    2. NM_001331932.1 → NP_001323336.1  15-cis-zeta-carotene isomerase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWQ2

    3. NM_001123792.1 → NP_001117264.1  15-cis-zeta-carotene isomerase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117264.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SAC0
      Conserved Domains (1) summary
      cl17713
      Location:140 → 265
      NnrU; NnrU protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SAC0.1

    Gene LinkOut

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