alkbh6 alkB homolog 6 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: alkbh6provided by ZNC
Official Full Name: alkB homolog 6provided by ZNC
Primary source: ZFIN:ZDB-GENE-060407-1
See related: Ensembl:ENSDARG00000077253 AllianceGenome:ZFIN:ZDB-GENE-060407-1
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:86795
Summary: Predicted to enable 2-oxoglutarate-dependent dioxygenase activity and metal ion binding activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human ALKBH6 (alkB homolog 6). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (36650096..36654698)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (36049943..36054545)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables 2-oxoglutarate-dependent dioxygenase activity	IEA Inferred from Electronic Annotation more info
enables dioxygenase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables oxidoreductase activity	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6

Names: alkB, alkylation repair homolog 6; alkylated DNA repair protein alkB homolog 6; probable alpha-ketoglutarate-dependent dioxygenase ABH6

NP_001005390.1

EC 3.4.22.17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.