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    cgd5_3710 small nuclear ribonucleoprotein U6 [ Cryptosporidium parvum Iowa II ]

    Gene ID: 3372544, updated on 17-May-2024

    Summary

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    Gene symbol
    cgd5_3710
    Gene description
    small nuclear ribonucleoprotein U6
    Locus tag
    cgd5_3710
    See related
    ApiDB_CryptoDB:cgd5_3710; CryptoDB:cgd5_3710; VEuPathDB:cgd5_3710
    Gene type
    protein coding
    RNA name
    small nuclear ribonucleoprotein U6
    RefSeq status
    PROVISIONAL
    Organism
    Cryptosporidium parvum Iowa II (isolate: Iowa type II)
    Lineage
    Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Cryptosporidiidae; Cryptosporidium
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    Genomic context

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    See cgd5_3710 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_006984.1 (861189..861671, complement)

    Chromosome 5 - NC_006984.1Genomic Context describing neighboring genes Neighboring gene protein with 8 transmembrane domains Neighboring gene Sec1 family Neighboring gene 40S ribosomal protein S17 Neighboring gene ankyrin repeat protein having a possible transmembrane domain

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_006984.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete genome sequence of the apicomplexan, Cryptosporidium parvum. Abrahamsen MS, et al. Science, 2004 Apr 16. PMID 15044751
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA cap binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    small nuclear ribonucleoprotein U6

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_006984.1 Reference assembly

      Range
      861189..861671 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_625536.1 → XP_625536.1  small nuclear ribonucleoprotein U6 [Cryptosporidium parvum Iowa II]

      See identical proteins and their annotated locations for XP_625536.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7S7LHL3, Q5CQ90
      Conserved Domains (1) summary
      cd01728
      Location:40 → 113
      LSm1; Like-Sm protein 1
    Nucleotide Protein
    Heading Accession and Version

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