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    SOX3 SRY-box 3 [ Gallus gallus (chicken) ]

    Gene ID: 374019, updated on 17-Aug-2024

    Summary

    Symbol
    SOX3provided by CGNC
    Full Name
    SRY-box 3provided by CGNC
    Primary source
    CGNC:66181
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    CH3
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    Genomic context

    See SOX3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (10462912..10464775)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (10496909..10498775)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532333 Neighboring gene uncharacterized LOC121110604 Neighboring gene uncharacterized LOC121110605 Neighboring gene microRNA 1750 Neighboring gene uncharacterized LOC124417914

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    transcription factor SOX-3
    Names
    SRY (sex determining region Y)-box 3
    SRY-related protein CH3
    cSox3
    transcription factor SOX3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204195.2 → NP_989526.1  transcription factor SOX-3

      See identical proteins and their annotated locations for NP_989526.1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000071
      UniProtKB/TrEMBL
      Q9PSV6
      Conserved Domains (2) summary
      cd01388
      Location:47 → 118
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam12336
      Location:117 → 197
      SOXp; SOX transcription factor

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      10462912..10464775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      10496909..10498775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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