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    Gasu_48470 AP-3 complex subunit sigma [ Galdieria sulphuraria ]

    Gene ID: 17086447, updated on 6-Jan-2024

    Summary

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    Gene symbol
    Gasu_48470
    Gene description
    AP-3 complex subunit sigma
    Locus tag
    Gasu_48470
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Galdieria sulphuraria (strain: 074W)
    Lineage
    Eukaryota; Rhodophyta; Bangiophyceae; Galdieriales; Galdieriaceae; Galdieria
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    Genomic context

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    See Gasu_48470 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    5

    NW_005178429.1Genomic Context describing neighboring genes Neighboring gene peptide-methionine (R)-S-oxide reductase Neighboring gene methylated-DNA-[protein]-cysteine S-methyltransferase Neighboring gene uracil-DNA glycosylase Neighboring gene V-type H+-transporting ATPase subunit h isoform 1;V-type H+-transporting ATPase subunit h isoform 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005178429.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-3 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-3 complex subunit sigma

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_005178429.1 Reference assembly

      Range
      17016..17890 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005704011.1 → XP_005704068.1  AP-3 complex subunit sigma [Galdieria sulphuraria]

      See identical proteins and their annotated locations for XP_005704068.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      M2XV64
      Conserved Domains (1) summary
      COG5030
      Location:36 → 176
      APS2; Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
    Nucleotide Protein
    Heading Accession and Version

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    Other Literature Sources
    Molecular Biology Databases