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    LOC103858688 thionin [ Brassica rapa (field mustard) ]

    Gene ID: 103858688, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103858688
    Gene description
    thionin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
    Also known as
    THI2
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    Genomic context

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    See LOC103858688 in Genome Data Viewer
    Location:
    chromosome: A3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A03 NC_024797.2 (14230766..14231602)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A3 NC_024797.1 (13326519..13327356)

    Chromosome A03 - NC_024797.2Genomic Context describing neighboring genes Neighboring gene probable ADP-ribosylation factor GTPase-activating protein AGD13 Neighboring gene U3 snoRNP-associated protein-like YAO Neighboring gene F-box protein SKIP19 Neighboring gene putative hydrolase C777.06c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thionin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024797.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      14230766..14231602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009136087.3 → XP_009134335.1  thionin

      UniProtKB/Swiss-Prot
      Q9SBK8
      UniProtKB/TrEMBL
      M4C9D6
      Conserved Domains (1) summary
      pfam00321
      Location:25 → 70
      Thionin; Plant thionin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SBK8.1 GenPept UniProtKB/Swiss-Prot:Q9SBK8

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