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    F0316_RS17865 PAS domain-containing protein [ Vibrio cholerae ]

    Gene ID: 69721986, updated on 3-Dec-2024

    Summary

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    Gene symbol
    F0316_RS17865
    Gene description
    PAS domain-containing protein
    Locus tag
    F0316_RS17865
    Gene type
    protein coding
    Organism
    Vibrio cholerae (strain: RFB16)
    Lineage
    Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
    Old locus tag
    F0316_17870
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    Genomic context

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    Location:
    chromosome: 2

    2 - NZ_CP043556.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene response regulator Neighboring gene bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase Neighboring gene 2-hydroxyacid dehydrogenase Neighboring gene Na+/H+ antiporter NhaC family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NZ_CP043556.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Neighbor predation linked to natural competence fosters the transfer of large genomic regions in Vibrio cholerae. Matthey N, et al. Elife, 2019 Sep 3. PMID 31478834, Free PMC Article
    2. Long-Read-Based Genome Sequences of Pandemic and Environmental Vibrio cholerae Strains. Matthey N, et al. Microbiol Resour Announc, 2018 Dec. PMID 30574591, Free PMC Article
    3. PAS domain S-boxes in Archaea, Bacteria and sensors for oxygen and redox. Zhulin IB, et al. Trends Biochem Sci, 1997 Sep. PMID 9301332
    4. 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Borgstahl GE, et al. Biochemistry, 1995 May 16. PMID 7756254
    5. The PAS fold. A redefinition of the PAS domain based upon structural prediction. Hefti MH, et al. Eur J Biochem, 2004 Mar. PMID 15009198

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    PAS domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NZ_CP043556.1 Reference assembly

      Range
      848060..848506
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_000880547.1 MULTISPECIES: PAS domain-containing protein [Vibrio]

      See identical proteins and their annotated locations for WP_000880547.1

      UniProtKB/TrEMBL
      A0A085SYU9, A0A0H3AFY0, A0A0K9UUW3, A0A0X1L2G7, C3LUL2, Q9KMX6
      Conserved Domains (1) summary
      pfam00989
      Location:17 → 134
      PAS; PAS fold
    Nucleotide Protein
    Heading Accession and Version

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