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    PIERCE1 piercer of microtubule wall 1 [ Tupaia chinensis (Chinese tree shrew) ]

    Gene ID: 102477627, updated on 10-Mar-2024

    Summary

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    Gene symbol
    PIERCE1
    Gene description
    piercer of microtubule wall 1
    Locus tag
    TREES_T100021830
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tupaia chinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
    Also known as
    CUNH9orf116
    Orthologs
    human mouse all
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    Genomic context

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    See PIERCE1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006160107.1 (35051..41077, complement)

    NW_006160107.1Genomic Context describing neighboring genes Neighboring gene caspase activity and apoptosis inhibitor 1-like Neighboring gene NGFI-A-binding protein 1 pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006160107 Unplaced Scaffold Reference TupChi_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in axoneme assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axonemal microtubule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UPF0691 protein C9orf116 homolog
    Names
    chromosome unknown C9orf116 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference TupChi_1.0

    Genomic

    1. NW_006160107.1 Reference TupChi_1.0

      Range
      35051..41077 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006158382.3 → XP_006158444.1  UPF0691 protein C9orf116 homolog

      See identical proteins and their annotated locations for XP_006158444.1

      UniProtKB/TrEMBL
      L9JDJ8
      Conserved Domains (1) summary
      pfam14892
      Location:8 → 108
      DUF4490; Domain of unknown function (DUF4490)
    Nucleotide Protein
    Heading Accession and Version

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