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    K08F9.3 GH18 domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 187168, updated on 9-Dec-2024

    Summary

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    Official Symbol
    K08F9.3
    Official Full Name
    GH18 domain-containing protein
    Primary source
    WormBase:WBGene00010686
    Locus tag
    CELE_K08F9.3
    See related
    AllianceGenome:WB:WBGene00010686
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in carbohydrate metabolic process. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See K08F9.3 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    6
    Sequence:
    Chromosome: V; NC_003283.11 (15140547..15144079)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Seven TM Receptor Neighboring gene Anaphase-promoting complex subunit 4-like WD40 domain-containing protein Neighboring gene Major facilitator superfamily (MFS) profile domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Transmembrane protein;Transposase Neighboring gene Hexosyltransferase Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    GH18 domain-containing protein
    NP_001263895.1
    • Partially confirmed by transcript evidence
    NP_001263896.1
    • Confirmed by transcript evidence
    NP_001263897.1
    • Partially confirmed by transcript evidence
    NP_506735.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      15140547..15144079
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001276966.3 → NP_001263895.1  GH18 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001263895.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      L8E826
      Conserved Domains (2) summary
      pfam00704
      Location:59 → 209
      Glyco_hydro_18; Glycosyl hydrolases family 18
      cl10447
      Location:61 → 213
      GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...

    2. NM_001276967.4 → NP_001263896.1  GH18 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001263896.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      L8EC39
      Conserved Domains (2) summary
      pfam00704
      Location:93 → 243
      Glyco_hydro_18; Glycosyl hydrolases family 18
      cl10447
      Location:95 → 247
      GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...

    3. NM_001276968.3 → NP_001263897.1  GH18 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001263897.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      L8E972
      Conserved Domains (2) summary
      pfam00704
      Location:122 → 272
      Glyco_hydro_18; Glycosyl hydrolases family 18
      cl10447
      Location:124 → 276
      GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...

    4. NM_074334.6 → NP_506735.3  GH18 domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506735.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      O17940
      Conserved Domains (2) summary
      pfam00704
      Location:109 → 259
      Glyco_hydro_18; Glycosyl hydrolases family 18
      cl10447
      Location:111 → 263
      GH18_chitinase-like; The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have ...
    Nucleotide Protein
    Heading Accession and Version

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