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    Mur89F Mucin related 89F [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42080, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Mur89Fprovided by FlyBase
    Official Full Name
    Mucin related 89Fprovided by FlyBase
    Primary source
    FLYBASE:FBgn0038492
    Locus tag
    Dmel_CG4090
    See related
    AllianceGenome:FB:FBgn0038492
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG4090; CT13556; Dmel\CG4090
    Summary
    Predicted to be an extracellular matrix structural constituent. Predicted to be located in extracellular matrix. Is expressed in embryonic/larval proventriculus; embryonic/larval salivary gland; and organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Mur89F in Genome Data Viewer
    Location:
    89F1-89F3; 3-60 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (17152995..17202130, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (12978717..13027852, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Single-strand-selective monofunctional uracil-DNA glycosylase Neighboring gene Deterin Neighboring gene uncharacterized protein Neighboring gene beaten path IIb Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cytological heterogeneity of heterochromatin among 10 sequenced Drosophila species. Marchetti M, et al. Genetics, 2022 Sep 30. PMID 35946576, Free PMC Article
    2. A potential role for Drosophila mucins in development and physiology. Syed ZA, et al. PLoS One, 2008 Aug 22. PMID 18725942, Free PMC Article
    3. A novel method for quantifying the rate of embryogenesis uncovers considerable genetic variation for the duration of embryonic development in Drosophila melanogaster. Horváth B, et al. BMC Evol Biol, 2016 Oct 7. PMID 27717305, Free PMC Article
    4. Integrating GWAS and Transcriptomics to Identify the Molecular Underpinnings of Thermal Stress Responses in Drosophila melanogaster. Lecheta MC, et al. Front Genet, 2020. PMID 32655626, Free PMC Article
    5. Flying toward a plastic-free world: Can Drosophila serve as a model organism to develop new strategies of plastic waste management? Pignataro E, et al. Sci Total Environ, 2024 Mar 1. PMID 38199375

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables chitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables extracellular matrix structural constituent ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    mucin related 89F
    Names
    CG4090-PB
    CG4090-PC
    Mur89F-PB
    Mur89F-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      17152995..17202130 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142354.2 → NP_650611.2  mucin related 89F, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650611.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VEL9
      Conserved Domains (2) summary
      pfam01607
      Location:1523 → 1577
      CBM_14; Chitin binding Peritrophin-A domain
      pfam15310
      Location:1599 → 1656
      VAD1-2; Vitamin A-deficiency (VAD) rat model signalling

    2. NM_001275733.1 → NP_001262662.1  mucin related 89F, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262662.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KG53
      Conserved Domains (2) summary
      pfam01607
      Location:1523 → 1577
      CBM_14; Chitin binding Peritrophin-A domain
      pfam15310
      Location:1599 → 1656
      VAD1-2; Vitamin A-deficiency (VAD) rat model signalling
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4KG53 A0A0B4KG53
    Q9VEL9 Q9VEL9

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