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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817598, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT2G30480
    Locus tag
    AT2G30480
    See related
    Araport:AT2G30480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6B20.25; T6B20_25
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    19
    Sequence:
    Chromosome: 2; NC_003071.7 (12987051..12993416, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Nucleotide/sugar transporter family protein Neighboring gene B3 domain-containing transcription repressor VAL1 Neighboring gene cinnamate-4-hydroxylase Neighboring gene Kinase interacting (KIP1-like) family protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. HEIP1 is required for efficient meiotic crossover implementation and is conserved from plants to humans. Singh DK, et al. Proc Natl Acad Sci U S A, 2023 Jun 6. PMID 37252974, Free PMC Article
    2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084512.3
    NM_001124946.2
    NM_001336262.1
    NM_001336263.1
    NM_001336264.1
    NM_001336265.1
    NM_001336266.1
    NM_001336269.1
    NM_001336270.1
    NM_001336271.1
    NM_128600.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA recombination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001077981.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 189 Blast hits to 180 proteins in 63 species: Archae - 0; Bacteria - 43; Metazoa - 86; Fungi - 6; Plants - 19; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
    NP_001118418.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_001318320.1
    • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_180606.2
    • unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12987051..12993416 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336267.1 → NP_001324341.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EGB6, F4INT5, Q0WKV1

    2. NM_001336268.1 → NP_001324342.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZU1, Q84X11

    3. NM_128600.2 → NP_180606.2  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180606.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5BPS4, Q84X11

    4. NM_001124946.2 → NP_001118418.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118418.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H6W6

    5. NM_001336270.1 → NP_001324344.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZT9, A0A7G2EGB6, Q0WKV1

    6. NM_001336269.1 → NP_001324343.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZT9, A0A7G2EGB6, Q0WKV1

    7. NM_001336262.1 → NP_001324337.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EGB6, F4INT5, Q0WKV1

    8. NM_001084512.3 → NP_001077981.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077981.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EGB6, F4INT5, Q0WKV1

    9. NM_001336271.1 → NP_001324345.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q5BPS4, Q84X11

    10. NM_001336263.1 → NP_001324340.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZT8, Q84X11

    11. NM_001336264.1 → NP_001324338.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3H6W6

    12. NM_001336265.1 → NP_001324339.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EGB6, F4INT8, Q0WKV1

    13. NM_001336266.1 → NP_001318320.1  uncharacterized protein AT2G30480 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EGB6, F4INT8, Q0WKV1
    Nucleotide Protein
    Heading Accession and Version

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