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    F-box/RNI-like/FBD-like domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826632, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box/RNI-like/FBD-like domains-containing protein
    Primary source
    TAIR:AT4G10400
    Locus tag
    AT4G10400
    See related
    Araport:AT4G10400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7L13.1
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (6446088..6448136, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NOD26-like intrinsic protein 5;1 Neighboring gene Protein kinase superfamily protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084898.2
    NM_001340663.1
    NM_117108.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box/RNI-like/FBD-like domains-containing protein
    NP_001078367.1
    • F-box/RNI-like/FBD-like domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT4G09920.1); Has 2206 Blast hits to 2153 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001319893.1
    • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT4G09920.1); Has 2206 Blast hits to 2153 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 2205; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6446088..6448136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084898.2 → NP_001078367.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078367.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV82
      UniProtKB/TrEMBL
      A0A654FMZ7, A1L4Y7
      Conserved Domains (4) summary
      smart00579
      Location:339 → 409
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:131 → 152
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:2 → 46
      F-box; F-box domain
      pfam07723
      Location:152 → 177
      LRR_2; Leucine Rich Repeat

    2. NM_001340663.1 → NP_001319893.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV82
      UniProtKB/TrEMBL
      A0A654FMZ7, A1L4Y7

    3. NM_117108.5 → NP_192778.2  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192778.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV82
      UniProtKB/TrEMBL
      A0A654FMZ7, A1L4Y7
      Conserved Domains (4) summary
      smart00579
      Location:339 → 409
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:131 → 152
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:2 → 46
      F-box; F-box domain
      pfam07723
      Location:152 → 177
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SV82.2

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