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    zgc:66447 zgc:66447 [ Danio rerio (zebrafish) ]

    Gene ID: 326023, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zgc:66447provided by ZNC
    Official Full Name
    zgc:66447provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4748
    See related
    Ensembl:ENSDARG00000025577 AllianceGenome:ZFIN:ZDB-GENE-030131-4748
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd58c02; wu:fd58c02
    Summary
    Predicted to be involved in cytoplasmic microtubule organization; microtubule nucleation; and positive regulation of microtubule polymerization. Predicted to colocalize with microtubule plus-end. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See zgc:66447 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (12020936..12051654, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (11714925..11745640, complement)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene FERM and PDZ domain containing 3 Neighboring gene zinc finger protein 711 Neighboring gene thymosin beta 1 Neighboring gene phosphoribosyl pyrophosphate synthetase 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in cytoplasmic microtubule organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in microtubule nucleation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of microtubule polymerization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    colocalizes_with microtubule plus-end IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    SLAIN motif-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199735.1 → NP_956029.1  SLAIN motif-containing protein-like

      See identical proteins and their annotated locations for NP_956029.1

      Status: PROVISIONAL

      Source sequence(s)
      BC055660
      UniProtKB/Swiss-Prot
      A7YYH2, Q7SXC6
      Related
      ENSDARP00000032457.7, ENSDART00000029366.9
      Conserved Domains (1) summary
      pfam15301
      Location:187 → 585
      SLAIN; SLAIN motif-containing family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      12020936..12051654 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005157125.5 → XP_005157182.1  SLAIN motif-containing protein-like isoform X1

      See identical proteins and their annotated locations for XP_005157182.1

      UniProtKB/TrEMBL
      A0A0R4I9B0
      Related
      ENSDARP00000152347.1, ENSDART00000193741.1
      Conserved Domains (1) summary
      pfam15301
      Location:187 → 585
      SLAIN; SLAIN motif-containing family

    2. XM_021480979.2 → XP_021336654.1  SLAIN motif-containing protein-like isoform X2

      UniProtKB/TrEMBL
      A0A8M9QGA9
      Conserved Domains (1) summary
      pfam15301
      Location:187 → 538
      SLAIN; SLAIN motif-containing family

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394896.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      133935..164330 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7SXC6.1 GenPept UniProtKB/Swiss-Prot:Q7SXC6

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