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    sh3bgrl3 SH3 domain binding glutamate-rich protein like 3 [ Danio rerio (zebrafish) ]

    Gene ID: 393248, updated on 9-Dec-2024

    Summary

    Official Symbol
    sh3bgrl3provided by ZNC
    Official Full Name
    SH3 domain binding glutamate-rich protein like 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1059
    See related
    Ensembl:ENSDARG00000098075 AllianceGenome:ZFIN:ZDB-GENE-040426-1059
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:56517; si:dkey-194c21.3
    Summary
    Predicted to be located in nucleus and ruffle membrane. Predicted to be active in cytoplasm. Is expressed in central nervous system; digestive system; notochord; otic vesicle; and sensory system. Orthologous to human SH3BGRL3 (SH3 domain binding glutamate rich protein like 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See sh3bgrl3 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (13939750..13950232, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (14077555..14088037, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene syntaxin 12 Neighboring gene tRNA selenocysteine 1 associated protein 1a Neighboring gene progestin and adipoQ receptor family member VII, a Neighboring gene uncharacterized LOC101885938

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC56517

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in ruffle membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    SH3 domain-binding glutamic acid-rich-like protein 3
    Names
    SH3 domain binding glutamic acid-rich protein like 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200278.2NP_956572.1  SH3 domain-binding glutamic acid-rich-like protein 3

      See identical proteins and their annotated locations for NP_956572.1

      Status: VALIDATED

      Source sequence(s)
      BX530067, EH440040
      UniProtKB/TrEMBL
      A0A8N1Z2Z4, Q7ZUC9
      Related
      ENSDARP00000131054.1, ENSDART00000168665.2
      Conserved Domains (1) summary
      cd03030
      Location:291
      GRX_SH3BGR; Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. ...

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      13939750..13950232 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)