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    RHOBTB3 Rho related BTB domain containing 3 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 461743, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RHOBTB3provided by VGNC
    Official Full Name
    Rho related BTB domain containing 3provided by VGNC
    Primary source
    VGNC:VGNC:8636
    Locus tag
    CK820_G0009149
    See related
    Ensembl:ENSPTRG00000017087
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See RHOBTB3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (20318489..20384098, complement)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (20734069..20799432, complement)

    Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene putative uncharacterized protein encoded by LINC01554 Neighboring gene glutaredoxin Neighboring gene 60 kDa heat shock protein, mitochondrial-like Neighboring gene endogenous retrovirus group S71 member 1 Env polyprotein-like Neighboring gene spermatogenesis associated 9 Neighboring gene Rieske Fe-S domain containing

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rho-related BTB domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      20318489..20384098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016952988.4 → XP_016808477.1  rho-related BTB domain-containing protein 3

      UniProtKB/TrEMBL
      A0A2J8NMD7, A0A2J8NMF3, A0A6D2XSK1, H2QR89, K6ZF78
      Related
      ENSPTRP00000029251.4
      Conserved Domains (2) summary
      pfam00651
      Location:413 → 518
      BTB; BTB/POZ domain
      cl21455
      Location:34 → 174
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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