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    BARD1 BRCA1 associated RING domain 1 [ Saimiri boliviensis (Bolivian squirrel monkey) ]

    Gene ID: 101047338, updated on 18-Nov-2024

    Summary

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    Gene symbol
    BARD1
    Gene description
    BRCA1 associated RING domain 1
    See related
    EnsemblRapid:ENSSBOG00000024817
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Saimiri boliviensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Saimiriinae; Saimiri
    Orthologs
    human mouse all
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    Genomic context

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    See BARD1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current BCM_Sbol_2.0 (GCF_016699345.1) Unplaced Scaffold NW_024100922.1 (77222195..77315995, complement)
    101 previous assembly SaiBol1.0 (GCF_000235385.1) Unplaced Scaffold NW_003943618.1 (14934994..15028763)

    NW_024100922.1Genomic Context describing neighboring genes Neighboring gene von Willebrand factor C domain containing 2 like Neighboring gene uncharacterized LOC101048504 Neighboring gene alpha-endosulfine-like Neighboring gene ras-related GTP-binding protein A-like Neighboring gene 40S ribosomal protein S6-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BRCA1-associated RING domain protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Saimiri boliviensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BCM_Sbol_2.0 Primary Assembly

    Genomic

    1. NW_024100922.1 Reference BCM_Sbol_2.0 Primary Assembly

      Range
      77222195..77315995 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003925572.3 → XP_003925621.1  BRCA1-associated RING domain protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A2K6T9C4
      Related
      ENSSBOP00000016241.1, ENSSBOT00000033046.2
      Conserved Domains (6) summary
      smart00292
      Location:662 → 760
      BRCT; breast cancer carboxy-terminal domain
      cd00027
      Location:561 → 634
      BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
      cd00204
      Location:417 → 537
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:425 → 517
      Ank_2; Ankyrin repeats (3 copies)
      pfam14835
      Location:36 → 100
      zf-RING_6; zf-RING of BARD1-type protein
      sd00045
      Location:420 → 451
      ANK; ANK repeat [structural motif]

    2. XM_010336364.2 → XP_010334666.1  BRCA1-associated RING domain protein 1 isoform X3

      See identical proteins and their annotated locations for XP_010334666.1

      UniProtKB/TrEMBL
      A0A2K6T9C8
      Conserved Domains (5) summary
      smart00292
      Location:523 → 621
      BRCT; breast cancer carboxy-terminal domain
      cd00027
      Location:422 → 495
      BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
      cd00204
      Location:278 → 398
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:286 → 378
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:281 → 312
      ANK; ANK repeat [structural motif]

    3. XM_010336366.2 → XP_010334668.1  BRCA1-associated RING domain protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A2K6T9B0
      Related
      ENSSBOP00000045803.1, ENSSBOT00000070013.1
      Conserved Domains (2) summary
      smart00292
      Location:194 → 292
      BRCT; breast cancer carboxy-terminal domain
      cd00027
      Location:93 → 166
      BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...

    4. XM_010336362.2 → XP_010334664.1  BRCA1-associated RING domain protein 1 isoform X3

      See identical proteins and their annotated locations for XP_010334664.1

      UniProtKB/TrEMBL
      A0A2K6T9C8
      Conserved Domains (5) summary
      smart00292
      Location:523 → 621
      BRCT; breast cancer carboxy-terminal domain
      cd00027
      Location:422 → 495
      BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
      cd00204
      Location:278 → 398
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:286 → 378
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:281 → 312
      ANK; ANK repeat [structural motif]

    5. XM_003925573.3 → XP_003925622.1  BRCA1-associated RING domain protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A2K6T9C8
      Related
      ENSSBOP00000016243.1, ENSSBOT00000033048.2
      Conserved Domains (6) summary
      smart00292
      Location:643 → 741
      BRCT; breast cancer carboxy-terminal domain
      cd00027
      Location:542 → 615
      BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
      cd00204
      Location:398 → 518
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:406 → 498
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:401 → 432
      ANK; ANK repeat [structural motif]
      cl17238
      Location:36 → 81
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

    6. XM_010336365.2 → XP_010334667.1  BRCA1-associated RING domain protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A2K6T9A0
      Related
      ENSSBOP00000044419.1, ENSSBOT00000076806.1
      Conserved Domains (3) summary
      smart00292
      Location:213 → 311
      BRCT; breast cancer carboxy-terminal domain
      cd00027
      Location:112 → 185
      BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
      cl17238
      Location:36 → 68
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

    7. XM_010336367.2 → XP_010334669.1  BRCA1-associated RING domain protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A2K6T999
      Related
      ENSSBOP00000042853.1, ENSSBOT00000069615.1
      Conserved Domains (2) summary
      smart00292
      Location:151 → 249
      BRCT; breast cancer carboxy-terminal domain
      pfam14835
      Location:36 → 100
      zf-RING_6; zf-RING of BARD1-type protein
    Nucleotide Protein
    Heading Accession and Version

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